Project measure / variable:   Seburn1   aa_dark

ID, description, units MPD:9228   aa_dark   ambulatory activity, beam breaks per min, 3 day test   [n/min]  dark  
Data set, strains Seburn1   inbred   16 strains     sex: both     age: 7-9wks
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  STRAIN COMPARISON PLOT
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Seburn1 - ambulatory activity, beam breaks per min, 3 day test dark



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested15 strains16 strains
Mean of the strain means18.1   n/min 13.9   n/min
Median of the strain means15.2   n/min 11.9   n/min
SD of the strain means± 8.18 ± 5.72
Coefficient of variation (CV)0.453 0.410
Min–max range of strain means8.86   –   33.8   n/min 7.10   –   24.8   n/min
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 805.7136 805.7136 20.209 < 0.0001
strain 14 9872.33 705.1664 17.6871 < 0.0001
sex:strain 14 1168.7566 83.4826 2.0939 0.0133
Residuals 210 8372.4806 39.869


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 8.86 2.32   8 0.82 0.262 5.5, 13.0 -1.12
129S1/SvImJ m 10.4 3.5   8 1.24 0.337 6.4, 16.7 -0.62
A/J f 18.0 6.83   8 2.41 0.38 8.0, 28.3 -0.01
A/J m 14.1 3.23   8 1.14 0.229 8.4, 18.2 0.03
AKR/J f 21.7 4.14   8 1.47 0.191 15.3, 26.5 0.44
AKR/J m 13.1 1.83   8 0.648 0.14 11.1, 15.5 -0.15
BALB/cJ f 21.5 6.84   8 2.42 0.319 13.3, 36.9 0.42
BALB/cJ m 16.9 3.66   8 1.29 0.217 11.5, 21.9 0.52
BTBR T+ Itpr3tf/J f 20.9 6.0   8 2.12 0.286 12.2, 28.8 0.35
BTBR T+ Itpr3tf/J m 20.4 5.35   8 1.89 0.263 14.1, 30.7 1.13
C3H/HeJ f 13.0 2.85   8 1.01 0.219 9.5, 16.8 -0.62
C3H/HeJ m 10.7 2.24   8 0.793 0.21 6.8, 14.2 -0.57
C57BL/6J f 33.8 6.33   8 2.24 0.187 22.4, 43.0 1.92
C57BL/6J m 20.9 2.33   8 0.824 0.111 17.4, 24.1 1.21
CAST/EiJ f 33.7 18.4   8 6.52 0.548 18.7, 76.9 1.91
CAST/EiJ m 21.4 10.4   8 3.66 0.485 7.4, 36.8 1.3
CBA/J f 15.0 4.35   8 1.54 0.29 9.8, 24.0 -0.37
CBA/J m 9.87 2.14   8 0.757 0.217 7.3, 12.8 -0.71
FVB/NJ f 15.2 6.51   8 2.3 0.429 4.3, 24.4 -0.35
FVB/NJ m 18.4 15.6   8 5.5 0.844 9.1, 56.2 0.78
LP/J f 9.26 3.16   8 1.12 0.341 5.6, 15.1 -1.08
LP/J m 8.56 3.78   8 1.34 0.442 4.9, 13.9 -0.94
NOD/ShiLtJ f 26.1 8.88   8 3.14 0.34 20.0, 43.9 0.98
NOD/ShiLtJ m 24.8 4.73   8 1.67 0.191 18.8, 29.5 1.9
NZB/BlNJ f 10.3 2.07   8 0.731 0.2 7.9, 13.5 -0.95
NZB/BlNJ m 8.21 2.08   8 0.736 0.253 6.3, 12.3 -1.0
PL/J f 13.2 3.3   8 1.17 0.25 7.5, 16.3 -0.59
PL/J m 10.6 1.72   8 0.607 0.161 8.2, 14.0 -0.58
SJL/J m 7.1 1.28   8 0.452 0.18 5.4, 8.5 -1.2
SWR/J f 10.4 2.61   8 0.921 0.251 6.3, 15.4 -0.94
SWR/J m 7.7 2.57   8 0.907 0.333 5.2, 13.7 -1.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 8.8625 2.2324 13.2633 4.4617
129S1/SvImJ m 10.375 2.2324 14.7758 5.9742
A/J f 17.975 2.2324 22.3758 13.5742
A/J m 14.0875 2.2324 18.4883 9.6867
AKR/J f 21.725 2.2324 26.1258 17.3242
AKR/J m 13.075 2.2324 17.4758 8.6742
BALB/cJ f 21.475 2.2324 25.8758 17.0742
BALB/cJ m 16.9 2.2324 21.3008 12.4992
BTBR T+ Itpr3tf/J f 20.9375 2.2324 25.3383 16.5367
BTBR T+ Itpr3tf/J m 20.3625 2.2324 24.7633 15.9617
C3H/HeJ f 13.0375 2.2324 17.4383 8.6367
C3H/HeJ m 10.67 2.2324 15.0708 6.2692
C57BL/6J f 33.8375 2.2324 38.2383 29.4367
C57BL/6J m 20.95 2.2324 25.3508 16.5492
CAST/EiJ f 33.6625 2.2324 38.0633 29.2617
CAST/EiJ m 21.375 2.2324 25.7758 16.9742
CBA/J f 15.025 2.2324 19.4258 10.6242
CBA/J m 9.875 2.2324 14.2758 5.4742
FVB/NJ f 15.175 2.2324 19.5758 10.7742
FVB/NJ m 18.4375 2.2324 22.8383 14.0367
LP/J f 9.2625 2.2324 13.6633 4.8617
LP/J m 8.5625 2.2324 12.9633 4.1617
NOD/ShiLtJ f 26.15 2.2324 30.5508 21.7492
NOD/ShiLtJ m 24.7875 2.2324 29.1883 20.3867
NZB/BlNJ f 10.3125 2.2324 14.7133 5.9117
NZB/BlNJ m 8.2125 2.2324 12.6133 3.8117
PL/J f 13.1625 2.2324 17.5633 8.7617
PL/J m 10.65 2.2324 15.0508 6.2492
SWR/J f 10.3875 2.2324 14.7883 5.9867
SWR/J m 7.7 2.2324 12.1008 3.2992


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 9.6187 1.5785 12.7306 6.5069
A/J both 16.0312 1.5785 19.1431 12.9194
AKR/J both 17.4 1.5785 20.5118 14.2882
BALB/cJ both 19.1875 1.5785 22.2993 16.0757
BTBR T+ Itpr3tf/J both 20.65 1.5785 23.7618 17.5382
C3H/HeJ both 11.8537 1.5785 14.9656 8.7419
C57BL/6J both 27.3937 1.5785 30.5056 24.2819
CAST/EiJ both 27.5187 1.5785 30.6306 24.4069
CBA/J both 12.45 1.5785 15.5618 9.3382
FVB/NJ both 16.8062 1.5785 19.9181 13.6944
LP/J both 8.9125 1.5785 12.0243 5.8007
NOD/ShiLtJ both 25.4687 1.5785 28.5806 22.3569
NZB/BlNJ both 9.2625 1.5785 12.3743 6.1507
PL/J both 11.9062 1.5785 15.0181 8.7944
SWR/J both 9.0437 1.5785 12.1556 5.9319




  GWAS USING LINEAR MIXED MODELS