Project measure / variable:   Seburn1   aa_daily

ID, description, units MPD:9226   aa_daily   ambulatory activity, beam breaks per min, 3 day test   [n/min]  daily  
Data set, strains Seburn1   inbred   16 strains     sex: both     age: 7-9wks
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  STRAIN COMPARISON PLOT
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Seburn1 - ambulatory activity, beam breaks per min, 3 day test daily



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested15 strains16 strains
Mean of the strain means13.4   n/min 10.7   n/min
Median of the strain means11.5   n/min 8.96   n/min
SD of the strain means± 6.20 ± 4.63
Coefficient of variation (CV)0.462 0.431
Min–max range of strain means5.96   –   26.0   n/min 5.61   –   19.4   n/min
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 323.803 323.803 15.5506 0.0001
strain 14 6050.2347 432.1596 20.7545 < 0.0001
sex:strain 14 627.4364 44.8169 2.1523 0.0106
Residuals 210 4372.7227 20.8225


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.96 1.67   8 0.592 0.281 3.7, 8.98 -1.2
129S1/SvImJ m 7.19 2.22   8 0.785 0.309 4.1, 10.6 -0.77
A/J f 11.5 4.0   8 1.41 0.347 5.5, 16.8 -0.31
A/J m 9.24 2.05   8 0.726 0.222 5.8, 11.7 -0.32
AKR/J f 14.3 2.28   8 0.805 0.16 10.9, 17.1 0.14
AKR/J m 9.35 1.27   8 0.449 0.136 7.8, 10.8 -0.3
BALB/cJ f 14.9 4.6   8 1.63 0.309 9.9, 25.5 0.24
BALB/cJ m 13.3 2.24   8 0.793 0.168 10.6, 17.4 0.55
BTBR T+ Itpr3tf/J f 14.7 3.73   8 1.32 0.254 8.9, 19.1 0.21
BTBR T+ Itpr3tf/J m 14.3 3.22   8 1.14 0.225 10.3, 20.1 0.77
C3H/HeJ f 8.86 1.76   8 0.621 0.198 6.6, 11.4 -0.73
C3H/HeJ m 7.1 1.4   8 0.497 0.198 4.7, 9.4 -0.79
C57BL/6J f 24.7 4.19   8 1.48 0.169 18.4, 32.2 1.82
C57BL/6J m 15.4 1.81   8 0.639 0.117 12.0, 17.6 1.0
CAST/EiJ f 26.0 11.8   8 4.19 0.456 13.8, 51.3 2.03
CAST/EiJ m 16.9 8.1   8 2.86 0.478 6.4, 30.7 1.33
CBA/J f 11.1 2.42   8 0.855 0.218 7.5, 15.8 -0.37
CBA/J m 7.73 1.69   8 0.596 0.218 5.3, 10.1 -0.65
FVB/NJ f 14.4 5.94   8 2.1 0.412 4.8, 23.4 0.16
FVB/NJ m 17.6 13.9   8 4.9 0.786 9.8, 51.2 1.48
LP/J f 6.69 2.39   8 0.845 0.358 3.4, 10.6 -1.08
LP/J m 6.4 2.34   8 0.829 0.366 3.5, 9.6 -0.94
NOD/ShiLtJ f 20.9 5.81   8 2.05 0.278 15.1, 32.2 1.21
NOD/ShiLtJ m 19.4 2.79   8 0.988 0.144 15.2, 22.7 1.87
NZB/BlNJ f 7.97 1.62   8 0.573 0.203 5.8, 10.2 -0.88
NZB/BlNJ m 5.61 1.54   8 0.543 0.274 4.4, 8.4 -1.11
PL/J f 9.55 2.13   8 0.752 0.223 6.0, 11.4 -0.62
PL/J m 8.69 0.93   8 0.329 0.107 7.4, 10.2 -0.44
SJL/J m 5.79 1.02   8 0.36 0.176 4.4, 7.4 -1.07
SWR/J f 9.55 1.96   8 0.693 0.205 6.7, 12.1 -0.62
SWR/J m 7.91 2.1   8 0.741 0.265 6.0, 12.5 -0.61


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.96 1.6133 9.1404 2.7796
129S1/SvImJ m 7.1875 1.6133 10.3679 4.0071
A/J f 11.5125 1.6133 14.6929 8.3321
A/J m 9.2375 1.6133 12.4179 6.0571
AKR/J f 14.275 1.6133 17.4554 11.0946
AKR/J m 9.35 1.6133 12.5304 6.1696
BALB/cJ f 14.9 1.6133 18.0804 11.7196
BALB/cJ m 13.35 1.6133 16.5304 10.1696
BTBR T+ Itpr3tf/J f 14.725 1.6133 17.9054 11.5446
BTBR T+ Itpr3tf/J m 14.3375 1.6133 17.5179 11.1571
C3H/HeJ f 8.8588 1.6133 12.0391 5.6784
C3H/HeJ m 7.0975 1.6133 10.2779 3.9171
C57BL/6J f 24.725 1.6133 27.9054 21.5446
C57BL/6J m 15.4375 1.6133 18.6179 12.2571
CAST/EiJ f 25.9875 1.6133 29.1679 22.8071
CAST/EiJ m 16.95 1.6133 20.1304 13.7696
CBA/J f 11.1 1.6133 14.2804 7.9196
CBA/J m 7.725 1.6133 10.9054 4.5446
FVB/NJ f 14.425 1.6133 17.6054 11.2446
FVB/NJ m 17.65 1.6133 20.8304 14.4696
LP/J f 6.6875 1.6133 9.8679 3.5071
LP/J m 6.4 1.6133 9.5804 3.2196
NOD/ShiLtJ f 20.9 1.6133 24.0804 17.7196
NOD/ShiLtJ m 19.35 1.6133 22.5304 16.1696
NZB/BlNJ f 7.975 1.6133 11.1554 4.7946
NZB/BlNJ m 5.6125 1.6133 8.7929 2.4321
PL/J f 9.55 1.6133 12.7304 6.3696
PL/J m 8.6875 1.6133 11.8679 5.5071
SWR/J f 9.55 1.6133 12.7304 6.3696
SWR/J m 7.9125 1.6133 11.0929 4.7321


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 6.5737 1.1408 8.8226 4.3249
A/J both 10.375 1.1408 12.6239 8.1261
AKR/J both 11.8125 1.1408 14.0614 9.5636
BALB/cJ both 14.125 1.1408 16.3739 11.8761
BTBR T+ Itpr3tf/J both 14.5313 1.1408 16.7801 12.2824
C3H/HeJ both 7.9781 1.1408 10.227 5.7293
C57BL/6J both 20.0813 1.1408 22.3301 17.8324
CAST/EiJ both 21.4687 1.1408 23.7176 19.2199
CBA/J both 9.4125 1.1408 11.6614 7.1636
FVB/NJ both 16.0375 1.1408 18.2864 13.7886
LP/J both 6.5438 1.1408 8.7926 4.2949
NOD/ShiLtJ both 20.125 1.1408 22.3739 17.8761
NZB/BlNJ both 6.7938 1.1408 9.0426 4.5449
PL/J both 9.1188 1.1408 11.3676 6.8699
SWR/J both 8.7312 1.1408 10.9801 6.4824




  GWAS USING LINEAR MIXED MODELS