Phenotype measure:   Willott1   ASR_latency

ID, description, units MPD:9106   ASR_latency   mean latency of acoustic startle response (ASR) evoked by 100 dB sound pressure level   [ms]
Data set, strains Willott1   inbred w/CC7   40 strains     sex: both     age: 5-6wks
Procedure acoustic startle test
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Willott1 - mean latency of acoustic startle response (ASR) evoked by 100 dB sound pressure level



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested40 strains40 strains
Mean of the strain means27.5   ms 28.2   ms
Median of the strain means27.9   ms 28.1   ms
SD of the strain means± 3.58 ± 4.28
Coefficient of variation (CV)0.130 0.152
Min–max range of strain means21.3   –   35.7   ms 20.8   –   39.1   ms
Mean sample size per strain10.1   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 99.3582 99.3582 5.4764 0.0195
strain 39 11281.8227 289.2775 15.9442 < 0.0001
sex:strain 39 892.5989 22.8872 1.2615 0.1351
Residuals 725 13153.7657 18.1431


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 30.1 2.9   10 0.918 0.0964 25.9, 35.2 0.73
129S1/SvImJ m 28.5 2.71   10 0.856 0.0948 25.4, 35.0 0.08
A/J f 29.7 8.16   10 2.58 0.274 13.3, 41.2 0.62
A/J m 28.1 3.68   10 1.16 0.131 21.5, 35.0 -0.02
AKR/J f 26.9 3.17   10 1.0 0.118 23.6, 34.2 -0.16
AKR/J m 27.4 2.02   10 0.638 0.0737 25.2, 31.7 -0.18
BALB/cJ f 26.7 4.56   18 1.07 0.171 21.4, 40.5 -0.22
BALB/cJ m 29.6 3.76   10 1.19 0.127 21.4, 34.2 0.33
BTBR T+ Itpr3tf/J f 27.7 4.92   10 1.55 0.177 20.7, 35.4 0.06
BTBR T+ Itpr3tf/J m 31.1 5.16   10 1.63 0.166 23.4, 38.1 0.68
BUB/BnJ f 22.7 2.31   10 0.73 0.102 19.4, 26.9 -1.34
BUB/BnJ m 23.9 2.83   10 0.896 0.119 19.7, 29.4 -1.0
C3H/HeJ f 32.5 3.76   10 1.19 0.116 28.6, 39.6 1.4
C3H/HeJ m 33.0 4.9   10 1.55 0.148 25.6, 40.6 1.13
C57BL/10J f 24.4 1.57   10 0.496 0.0642 22.2, 27.4 -0.86
C57BL/10J m 25.8 3.82   10 1.21 0.148 21.4, 35.1 -0.55
C57BL/6J f 29.7 3.59   11 1.08 0.121 24.9, 35.6 0.62
C57BL/6J m 30.8 3.53   10 1.12 0.114 23.6, 34.6 0.61
C57BLKS/J f 24.5 2.46   10 0.779 0.1 21.5, 29.2 -0.83
C57BLKS/J m 28.0 5.68   10 1.8 0.203 21.9, 39.2 -0.04
C57BR/cdJ f 28.7 3.97   10 1.26 0.138 23.7, 37.2 0.34
C57BR/cdJ m 36.2 6.0   10 1.9 0.166 28.3, 45.8 1.88
C57L/J f 26.6 1.67   10 0.528 0.0628 24.5, 29.9 -0.25
C57L/J m 28.6 5.4   10 1.71 0.189 22.8, 43.1 0.1
C58/J f 21.7 1.76   10 0.556 0.081 19.9, 24.9 -1.62
C58/J m 22.5 4.29   10 1.36 0.191 19.4, 33.6 -1.33
CAST/EiJ f 30.9 4.04   10 1.28 0.131 26.2, 37.0 0.95
CAST/EiJ m 32.7 3.21   10 1.01 0.0981 27.8, 37.3 1.06
CBA/J f 30.8 4.38   9 1.46 0.142 25.4, 38.6 0.93
CBA/J m 31.4 4.81   10 1.52 0.153 22.0, 39.1 0.75
CE/J f 25.2 1.8   10 0.568 0.0712 21.7, 27.2 -0.64
CE/J m 28.1 2.79   10 0.883 0.0993 25.4, 34.4 -0.02
CZECHII/EiJ f 21.3 1.33   9 0.442 0.0622 20.0, 23.6 -1.73
CZECHII/EiJ m 20.9 1.36   11 0.409 0.0648 19.8, 24.1 -1.7
DBA/2J f 29.6 4.72   10 1.49 0.16 20.5, 36.7 0.59
DBA/2J m 30.1 4.86   10 1.54 0.162 21.1, 40.0 0.45
FVB/NJ f 30.4 5.72   10 1.81 0.188 18.2, 39.0 0.82
FVB/NJ m 32.4 2.9   10 0.918 0.0896 28.8, 38.1 0.99
I/LnJ f 28.2 4.83   10 1.53 0.171 22.4, 35.2 0.2
I/LnJ m 29.7 4.6   10 1.46 0.155 23.1, 37.4 0.36
JF1/MsJ f 35.7 8.03   10 2.54 0.225 27.5, 51.1 2.3
JF1/MsJ m 39.1 13.7   10 4.32 0.35 22.7, 61.8 2.55
KK/HlJ f 28.1 2.69   10 0.851 0.096 22.4, 31.9 0.17
KK/HlJ m 26.5 2.8   10 0.887 0.106 22.9, 30.9 -0.39
LP/J f 22.2 3.14   10 0.994 0.142 18.5, 29.1 -1.48
LP/J m 20.8 1.78   10 0.562 0.0854 18.5, 23.4 -1.72
MA/MyJ f 27.4 4.16   10 1.32 0.152 22.1, 35.1 -0.02
MA/MyJ m 26.5 3.24   10 1.03 0.122 22.6, 33.2 -0.39
MOLF/EiJ f 33.4 10.2   10 3.22 0.305 17.9, 47.1 1.65
MOLF/EiJ m 33.1 7.76   10 2.45 0.235 21.4, 44.1 1.15
MSM/MsJ f 29.2 5.01   10 1.59 0.172 22.6, 36.1 0.48
MSM/MsJ m 31.4 2.74   10 0.867 0.0872 27.9, 35.5 0.75
NOD/ShiLtJ f 33.4 8.09   10 2.56 0.242 21.6, 43.4 1.65
NOD/ShiLtJ m 32.7 6.09   10 1.93 0.186 24.5, 42.0 1.06
NON/ShiLtJ f 29.0 3.29   11 0.993 0.113 22.8, 34.0 0.42
NON/ShiLtJ m 30.3 3.31   9 1.1 0.109 26.4, 37.1 0.5
NZB/BlNJ f 29.4 3.63   10 1.15 0.124 22.6, 34.2 0.54
NZB/BlNJ m 24.0 1.19   10 0.375 0.0495 21.8, 25.8 -0.98
NZW/LacJ f 25.7 2.07   10 0.653 0.0803 22.7, 29.1 -0.5
NZW/LacJ m 26.5 1.55   10 0.489 0.0583 24.1, 28.6 -0.39
PERA/EiJ f 31.9 2.83   10 0.895 0.0887 28.2, 37.0 1.23
PERA/EiJ m 33.4 3.2   10 1.01 0.0957 28.1, 39.3 1.22
PL/J f 24.1 3.6   10 1.14 0.149 19.9, 29.9 -0.94
PL/J m 20.8 1.74   10 0.552 0.084 17.6, 24.1 -1.72
PWK/PhJ f 28.3 3.82   8 1.35 0.135 24.1, 35.3 0.23
PWK/PhJ m 27.2 1.98   10 0.625 0.0727 24.2, 29.9 -0.23
RIIIS/J f 26.3 2.19   10 0.693 0.0834 22.9, 30.1 -0.33
RIIIS/J m 25.3 3.21   10 1.02 0.127 21.7, 33.1 -0.67
SEA/GnJ f 24.9 2.39   14 0.639 0.0959 22.1, 30.6 -0.72
SEA/GnJ m 25.1 2.72   10 0.861 0.108 21.2, 31.1 -0.72
SJL/J f 25.0 2.89   10 0.915 0.116 20.0, 28.9 -0.69
SJL/J m 24.7 3.37   10 1.07 0.136 19.1, 29.9 -0.81
SM/J f 21.5 1.4   10 0.443 0.0651 19.0, 23.4 -1.67
SM/J m 21.8 1.39   10 0.439 0.0637 19.9, 24.9 -1.49
SPRET/EiJ f 24.9 2.18   10 0.69 0.0877 21.8, 28.2 -0.72
SPRET/EiJ m 27.1 3.33   10 1.05 0.123 22.7, 33.8 -0.25
SWR/J f 21.8 0.742   10 0.235 0.0341 20.6, 22.8 -1.59
SWR/J m 22.7 2.09   10 0.659 0.0919 20.3, 26.7 -1.28
WSB/EiJ f 28.8 5.4   7 2.04 0.187 22.7, 38.6 0.37
WSB/EiJ m 29.1 1.64   8 0.578 0.0562 27.1, 31.8 0.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 30.09 1.347 32.7344 27.4456
129S1/SvImJ m 28.545 1.347 31.1894 25.9006
A/J f 29.742 1.347 32.3864 27.0976
A/J m 28.095 1.347 30.7394 25.4506
AKR/J f 26.92 1.347 29.5644 24.2756
AKR/J m 27.4 1.347 30.0444 24.7556
BALB/cJ f 26.7 1.004 28.671 24.729
BALB/cJ m 29.62 1.347 32.2644 26.9756
BTBR T+ Itpr3tf/J f 27.745 1.347 30.3894 25.1006
BTBR T+ Itpr3tf/J m 31.065 1.347 33.7094 28.4206
BUB/BnJ f 22.73 1.347 25.3744 20.0856
BUB/BnJ m 23.905 1.347 26.5494 21.2606
C3H/HeJ f 32.515 1.347 35.1594 29.8706
C3H/HeJ m 33.035 1.347 35.6794 30.3906
C57BL/10J f 24.405 1.347 27.0494 21.7606
C57BL/10J m 25.77 1.347 28.4144 23.1256
C57BL/6J f 29.6955 1.2843 32.2168 27.1741
C57BL/6J m 30.82 1.347 33.4644 28.1756
C57BLKS/J f 24.55 1.347 27.1944 21.9056
C57BLKS/J m 27.965 1.347 30.6094 25.3206
C57BR/cdJ f 28.68 1.347 31.3244 26.0356
C57BR/cdJ m 36.225 1.347 38.8694 33.5806
C57L/J f 26.565 1.347 29.2094 23.9206
C57L/J m 28.585 1.347 31.2294 25.9406
C58/J f 21.685 1.347 24.3294 19.0406
C58/J m 22.51 1.347 25.1544 19.8656
CAST/EiJ f 30.92 1.347 33.5644 28.2756
CAST/EiJ m 32.725 1.347 35.3694 30.0806
CBA/J f 30.85 1.4198 33.6375 28.0625
CBA/J m 31.375 1.347 34.0194 28.7306
CE/J f 25.225 1.347 27.8694 22.5806
CE/J m 28.11 1.347 30.7544 25.4656
CZECHII/EiJ f 21.3111 1.4198 24.0986 18.5237
CZECHII/EiJ m 20.9364 1.2843 23.4577 18.415
DBA/2J f 29.565 1.347 32.2094 26.9206
DBA/2J m 30.105 1.347 32.7494 27.4606
FVB/NJ f 30.382 1.347 33.0264 27.7376
FVB/NJ m 32.415 1.347 35.0594 29.7706
I/LnJ f 28.24 1.347 30.8844 25.5956
I/LnJ m 29.675 1.347 32.3194 27.0306
JF1/MsJ f 35.68 1.347 38.3244 33.0356
JF1/MsJ m 39.065 1.347 41.7094 36.4206
KK/HlJ f 28.05 1.347 30.6944 25.4056
KK/HlJ m 26.535 1.347 29.1794 23.8906
LP/J f 22.165 1.347 24.8094 19.5206
LP/J m 20.805 1.347 23.4494 18.1606
MA/MyJ f 27.405 1.347 30.0494 24.7606
MA/MyJ m 26.465 1.347 29.1094 23.8206
MOLF/EiJ f 33.395 1.347 36.0394 30.7506
MOLF/EiJ m 33.08 1.347 35.7244 30.4356
MSM/MsJ f 29.17 1.347 31.8144 26.5256
MSM/MsJ m 31.42 1.347 34.0644 28.7756
NOD/ShiLtJ f 33.4 1.347 36.0444 30.7556
NOD/ShiLtJ m 32.745 1.347 35.3894 30.1006
NON/ShiLtJ f 29.0227 1.2843 31.5441 26.5014
NON/ShiLtJ m 30.2833 1.4198 33.0708 27.4959
NZB/BlNJ f 29.4 1.347 32.0444 26.7556
NZB/BlNJ m 23.965 1.347 26.6094 21.3206
NZW/LacJ f 25.715 1.347 28.3594 23.0706
NZW/LacJ m 26.54 1.347 29.1844 23.8956
PERA/EiJ f 31.905 1.347 34.5494 29.2606
PERA/EiJ m 33.425 1.347 36.0694 30.7806
PL/J f 24.095 1.347 26.7394 21.4506
PL/J m 20.78 1.347 23.4244 18.1356
PWK/PhJ f 28.2937 1.506 31.2503 25.3372
PWK/PhJ m 27.215 1.347 29.8594 24.5706
RIIIS/J f 26.265 1.347 28.9094 23.6206
RIIIS/J m 25.345 1.347 27.9894 22.7006
SEA/GnJ f 24.9357 1.1384 27.1707 22.7008
SEA/GnJ m 25.14 1.347 27.7844 22.4956
SJL/J f 24.96 1.347 27.6044 22.3156
SJL/J m 24.715 1.347 27.3594 22.0706
SM/J f 21.495 1.347 24.1394 18.8506
SM/J m 21.78 1.347 24.4244 19.1356
SPRET/EiJ f 24.89 1.347 27.5344 22.2456
SPRET/EiJ m 27.1 1.347 29.7444 24.4556
SWR/J f 21.76 1.347 24.4044 19.1156
SWR/J m 22.685 1.347 25.3294 20.0406
WSB/EiJ f 28.8286 1.6099 31.9893 25.6679
WSB/EiJ m 29.075 1.506 32.0315 26.1185


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 29.3175 0.9524 31.1874 27.4476
A/J both 28.9185 0.9524 30.7884 27.0486
AKR/J both 27.16 0.9524 29.0299 25.2901
BALB/cJ both 28.16 0.84 29.8091 26.5109
BTBR T+ Itpr3tf/J both 29.405 0.9524 31.2749 27.5351
BUB/BnJ both 23.3175 0.9524 25.1874 21.4476
C3H/HeJ both 32.775 0.9524 34.6449 30.9051
C57BL/10J both 25.0875 0.9524 26.9574 23.2176
C57BL/6J both 30.2577 0.9305 32.0846 28.4308
C57BLKS/J both 26.2575 0.9524 28.1274 24.3876
C57BR/cdJ both 32.4525 0.9524 34.3224 30.5826
C57L/J both 27.575 0.9524 29.4449 25.7051
C58/J both 22.0975 0.9524 23.9674 20.2276
CAST/EiJ both 31.8225 0.9524 33.6924 29.9526
CBA/J both 31.1125 0.9785 33.0336 29.1914
CE/J both 26.6675 0.9524 28.5374 24.7976
CZECHII/EiJ both 21.1237 0.9572 23.003 19.2444
DBA/2J both 29.835 0.9524 31.7049 27.9651
FVB/NJ both 31.3985 0.9524 33.2684 29.5286
I/LnJ both 28.9575 0.9524 30.8274 27.0876
JF1/MsJ both 37.3725 0.9524 39.2424 35.5026
KK/HlJ both 27.2925 0.9524 29.1624 25.4226
LP/J both 21.485 0.9524 23.3549 19.6151
MA/MyJ both 26.935 0.9524 28.8049 25.0651
MOLF/EiJ both 33.2375 0.9524 35.1074 31.3676
MSM/MsJ both 30.295 0.9524 32.1649 28.4251
NOD/ShiLtJ both 33.0725 0.9524 34.9424 31.2026
NON/ShiLtJ both 29.653 0.9572 31.5323 27.7737
NZB/BlNJ both 26.6825 0.9524 28.5524 24.8126
NZW/LacJ both 26.1275 0.9524 27.9974 24.2576
PERA/EiJ both 32.665 0.9524 34.5349 30.7951
PL/J both 22.4375 0.9524 24.3074 20.5676
PWK/PhJ both 27.7544 1.0102 29.7377 25.7711
RIIIS/J both 25.805 0.9524 27.6749 23.9351
SEA/GnJ both 25.0379 0.8818 26.769 23.3067
SJL/J both 24.8375 0.9524 26.7074 22.9676
SM/J both 21.6375 0.9524 23.5074 19.7676
SPRET/EiJ both 25.995 0.9524 27.8649 24.1251
SWR/J both 22.2225 0.9524 24.0924 20.3526
WSB/EiJ both 28.9518 1.1022 31.1158 26.7878




  GWAS USING LINEAR MIXED MODELS