Project measure / variable:   CSNA03   dist_l60_cont_in_d12

ID, description, units MPD:90424   dist_l60_cont_in_d12   distance traveled, last 60 min (post-injection), on successive days, saline control, founders   [cm]  day 12  
Data set, strains CSNA03   inbred w/CC8   9 strains     sex: both     age: 8-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled, last 60 min (post-injection), on successive days, saline control, founders day 12



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means10136.0   cm 6879.0   cm
Median of the strain means7122.0   cm 5188.0   cm
SD of the strain means± 8965.0 ± 5562.0
Coefficient of variation (CV)0.8845 0.8086
Min–max range of strain means305.8   –   24476.0   cm 211.4   –   14710.0   cm
Mean sample size per strain6.8   mice 6.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 248639112.2301 248639112.2301 3.3847 0.0687
strain 8 5550629300.4475 693828662.5559 9.4451 < 0.0001
sex:strain 8 642406861.7323 80300857.7165 1.0931 0.3741
Residuals 103 7566269143.5965 73458923.7242


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 305.8 560.8   8 198.3 1.834 -1.1
129S1/SvImJ m 211.4 368.4   8 130.2 1.7427 -1.2
A/J f 1735.0 1467.0   6 598.7 0.8454 -0.94
A/J m 2618.0 4088.0   8 1445.0 1.5619 800.9, 12710.0 -0.77
C57BL/6J f 7122.0 2117.0   7 800.1 0.2972 3725.0, 10005.0 -0.34
C57BL/6J m 5188.0 2666.0   6 1088.0 0.5139 2583.0, 10200.0 -0.3
CAST/EiJ f 17819.0 5471.0   7 2068.0 0.307 9817.0, 25417.0 0.86
CAST/EiJ m 11658.0 6268.0   7 2369.0 0.5376 7091.0, 23378.0 0.86
DBA/2J f 4956.0 746.1   3 430.7 0.1505 4336.0, 5784.0 -0.58
DBA/2J m 4898.0 551.5   2   390.0 0.1126 4508.0, 5288.0 -0.36
NOD/ShiLtJ f 24476.0 35077.0   5 15687.0 1.4331 5483.0, 86859.0 1.6
NOD/ShiLtJ m 7732.0 3697.0   5 1653.0 0.4782 4604.0, 12908.0 0.15
NZO/HlLtJ f 996.8 717.7   10 227.0 0.72 26.796, 2397.0 -1.02
NZO/HlLtJ m 644.2 245.8   9 81.94 0.3816 303.3, 1064.0 -1.12
PWK/PhJ f 16935.0 4493.0   8 1589.0 0.2653 11255.0, 22049.0 0.76
PWK/PhJ m 14251.0 7654.0   8 2706.0 0.5371 6200.0, 31554.0 1.33
WSB/EiJ f 16876.0 5308.0   7 2006.0 0.3145 11611.0, 27378.0 0.75
WSB/EiJ m 14710.0 14460.0   7 5465.0 0.983 5147.0, 46880.0 1.41


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 305.8 3030.2418163456 6315.5699443515 -5703.9699443515
129S1/SvImJ m 211.37875 3030.2418163456 6221.1486943515 -5798.3911943515
A/J f 1734.6166666667 3499.0218567536 8674.1012569448 -5204.8679236115
A/J m 2617.6125 3030.2418163456 8627.3824443515 -3392.1574443515
C57BL/6J f 7122.1428571429 3239.464764526 13546.8571728842 697.4285414015
C57BL/6J m 5187.8333333333 3499.0218567536 12127.3179236115 -1751.6512569448
CAST/EiJ f 17818.5714285714 3239.464764526 24243.2857443128 11393.8571128301
CAST/EiJ m 11658.4285714286 3239.464764526 18083.1428871699 5233.7142556872
DBA/2J f 4956.0 4948.3641648609 14769.9132234504 -4857.9132234504
DBA/2J m 4898.0 6060.4836326913 16917.539888703 -7121.539888703
NOD/ShiLtJ f 24475.8 3832.9864002951 32077.6244951096 16873.9755048903
NOD/ShiLtJ m 7731.8 3832.9864002951 15333.6244951096 129.9755048903
NZO/HlLtJ f 996.7596 2710.3306758445 6372.061249882 -4378.542049882
NZO/HlLtJ m 644.1555555556 2856.9393826307 6310.2209969183 -5021.9098858072
PWK/PhJ f 16935.0 3030.2418163456 22944.7699443515 10925.2300556485
PWK/PhJ m 14251.0 3030.2418163456 20260.7699443515 8241.2300556485
WSB/EiJ f 16876.2857142857 3239.464764526 23301.0000300271 10451.5713985443
WSB/EiJ m 14710.2857142857 3239.464764526 21135.0000300271 8285.5713985444


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 258.589375 2142.704536973 4508.138456022 -3990.959706022
A/J both 2176.1145833333 2314.3854162374 6766.1521965436 -2413.9230298769
C57BL/6J both 6154.9880952381 2384.1815112657 10883.4498011632 1426.526389313
CAST/EiJ both 14738.5 2290.6475024112 19281.459059847 10195.540940153
DBA/2J both 4927.0 3912.0253632293 12685.5796363371 -2831.5796363371
NOD/ShiLtJ both 16103.8 2710.3306758445 21479.101649882 10728.4983501179
NZO/HlLtJ both 820.4575777778 1969.0095865974 4725.5236915916 -3084.6085360361
PWK/PhJ both 15593.0 2142.704536973 19842.5490810221 11343.450918978
WSB/EiJ both 15793.2857142857 2290.6475024112 20336.2447741327 11250.3266544387




  GWAS USING LINEAR MIXED MODELS