Project measure / variable:   CSNA03   dist_l60_cont_in_d5

ID, description, units MPD:90400   dist_l60_cont_in_d5   distance traveled, last 60 min (post-injection), on successive days, saline control, founders   [cm]  day 5  
Data set, strains CSNA03   inbred w/CC8   9 strains     sex: both     age: 8-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled, last 60 min (post-injection), on successive days, saline control, founders day 5



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means10499.0   cm 7088.0   cm
Median of the strain means8996.0   cm 6564.0   cm
SD of the strain means± 9137.0 ± 6458.0
Coefficient of variation (CV)0.8703 0.9111
Min–max range of strain means385.7   –   23727.0   cm 339.1   –   18023.0   cm
Mean sample size per strain6.8   mice 6.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 335794092.7851 335794092.7851 12.8585 0.0005
strain 8 6579895293.1822 822486911.6478 31.4952 < 0.0001
sex:strain 8 666314989.0134 83289373.6267 3.1894 0.0029
Residuals 102 2663695107.3352 26114657.9151


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 385.7 455.9   8 161.2 1.1821 -1.11
129S1/SvImJ m 339.1 523.3   8 185.0 1.5433 -1.05
A/J f 1155.0 521.1   7 197.0 0.451 687.1, 2215.0 -1.02
A/J m 1218.0 482.0   8 170.4 0.3958 842.5, 2008.0 -0.91
C57BL/6J f 8996.0 1818.0   7 687.2 0.2021 7775.0, 12998.0 -0.16
C57BL/6J m 6564.0 1847.0   6 753.8 0.2813 3853.0, 9066.0 -0.08
CAST/EiJ f 16630.0 8147.0   7 3079.0 0.4899 6090.0, 30958.0 0.67
CAST/EiJ m 18023.0 12437.0   7 4701.0 0.6901 8715.0, 42319.0 1.69
DBA/2J f 4926.0 2729.0   3 1576.0 0.554 1928.0, 7266.0 -0.61
DBA/2J m 3520.0 1473.0   2   1042.0 0.4184 2479.0, 4562.0 -0.55
NOD/ShiLtJ f 17817.0 13055.0   5 5838.0 0.7327 6522.0, 36683.0 0.8
NOD/ShiLtJ m 7469.0 4256.0   5 1904.0 0.5699 3272.0, 14404.0 0.06
NZO/HlLtJ f 970.0 597.9   9 199.3 0.6164 -1.04
NZO/HlLtJ m 669.4 336.9   9 112.3 0.5032 192.2, 1343.0 -0.99
PWK/PhJ f 19886.0 3618.0   8 1279.0 0.182 14241.0, 25150.0 1.03
PWK/PhJ m 15222.0 6089.0   7 2302.0 0.4 8410.0, 25041.0 1.26
WSB/EiJ f 23727.0 5151.0   7 1947.0 0.2171 15302.0, 32589.0 1.45
WSB/EiJ m 10763.0 2754.0   7 1041.0 0.2559 6605.0, 14670.0 0.57


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 385.7125 1806.7463129564 3969.3852451749 -3197.9602451749
129S1/SvImJ m 339.075 1806.7463129564 3922.7477451749 -3244.5977451749
A/J f 1155.3857142857 1931.4930536856 4986.4930282183 -2675.7215996469
A/J m 1218.0375 1806.7463129563 4801.7102451749 -2365.6352451749
C57BL/6J f 8996.2857142857 1931.4930536856 12827.3930282183 5165.1784003531
C57BL/6J m 6564.1666666667 2086.2509402854 10702.2355148952 2426.0978184382
CAST/EiJ f 16630.2857142857 1931.4930536856 20461.3930282183 12799.1784003531
CAST/EiJ m 18023.1428571429 1931.4930536856 21854.2501710755 14192.0355432103
DBA/2J f 4925.6666666667 2950.4043742653 10777.779753865 -926.4464205317
DBA/2J m 3520.5 3613.4926259127 10687.8454903498 -3646.8454903498
NOD/ShiLtJ f 17817.4 2285.3734012214 22350.4273053683 13284.3726946316
NOD/ShiLtJ m 7469.3999999999 2285.3734012214 12002.4273053683 2936.3726946316
NZO/HlLtJ f 969.9777777778 1703.4167597003 4348.6968439999 -2408.7412884443
NZO/HlLtJ m 669.4 1703.4167597003 4048.1190662221 -2709.3190662221
PWK/PhJ f 19886.0 1806.7463129564 23469.6727451749 16302.3272548251
PWK/PhJ m 15221.7142857143 1931.4930536856 19052.8215996469 11390.6069717817
WSB/EiJ f 23727.1428571429 1931.4930536856 27558.2501710754 19896.0355432103
WSB/EiJ m 10763.2857142857 1931.4930536856 14594.3930282183 6932.1784003531


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 362.39375 1277.5625697752 2896.4330496666 -2171.6455496666
A/J both 1186.7116071429 1322.4028939602 3809.6914772227 -1436.268262937
C57BL/6J both 7780.2261904762 1421.5403970937 10599.8448279672 4960.6075529852
CAST/EiJ both 17326.7142857143 1365.7718360758 20035.7162468494 14617.7123245792
DBA/2J both 4223.0833333333 2332.4994603005 8849.5849534399 -403.4182867732
NOD/ShiLtJ both 12643.3999999999 1616.003029547 15848.7343469297 9438.0656530702
NZO/HlLtJ both 819.6888888889 1204.4975419709 3208.8040523388 -1569.426274561
PWK/PhJ both 17553.8571428571 1322.4028939602 20176.837012937 14930.8772727773
WSB/EiJ both 17245.2142857143 1365.7718360758 19954.2162468494 14536.2123245792




  GWAS USING LINEAR MIXED MODELS