Project measure / variable:   CSNA03   dist_f30_cont_in_d12

ID, description, units MPD:90370   dist_f30_cont_in_d12   distance traveled, first 30 min (pre-injection), on successive days, saline group, founders   [cm]  day 12  
Data set, strains CSNA03   inbred w/CC8   9 strains     sex: both     age: 8-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled, first 30 min (pre-injection), on successive days, saline group, founders day 12



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means6091.0   cm 5206.0   cm
Median of the strain means5675.0   cm 5215.0   cm
SD of the strain means± 4756.0 ± 3589.0
Coefficient of variation (CV)0.7808 0.6894
Min–max range of strain means300.9   –   14478.0   cm 517.9   –   11091.0   cm
Mean sample size per strain6.8   mice 6.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 25084867.8619 25084867.8619 1.5257 0.2196
strain 8 1851488522.388 231436065.2985 14.076 < 0.0001
sex:strain 8 52721803.8427 6590225.4803 0.4008 0.9178
Residuals 103 1693516993.725 16441912.5604


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 300.9 341.9   8 120.9 1.1364 -1.22
129S1/SvImJ m 517.9 559.8   8 197.9 1.0808 -1.31
A/J f 1683.0 1159.0   6 473.3 0.6889 142.6, 2956.0 -0.93
A/J m 2161.0 1295.0   8 458.0 0.5993 889.9, 5012.0 -0.85
C57BL/6J f 5675.0 1022.0   7 386.4 0.1801 4247.0, 7118.0 -0.09
C57BL/6J m 5215.0 1364.0   6 556.9 0.2616 3255.0, 7074.0 0.0
CAST/EiJ f 9898.0 1946.0   7 735.3 0.1966 7537.0, 13250.0 0.8
CAST/EiJ m 6799.0 3093.0   7 1169.0 0.4549 3756.0, 13307.0 0.44
DBA/2J f 3797.0 1114.0   3 643.1 0.2933 2717.0, 4942.0 -0.48
DBA/2J m 4306.0 1965.0   2   1390.0 0.4563 2917.0, 5696.0 -0.25
NOD/ShiLtJ f 14478.0 13733.0   5 6142.0 0.9486 4853.0, 38130.0 1.76
NOD/ShiLtJ m 11091.0 9492.0   5 4245.0 0.8559 4162.0, 27765.0 1.64
NZO/HlLtJ f 1348.0 570.1   10 180.3 0.4228 658.1, 2323.0 -1.0
NZO/HlLtJ m 892.7 705.3   9 235.1 0.7901 378.1, 2561.0 -1.2
PWK/PhJ f 9236.0 1710.0   8 604.7 0.1852 7356.0, 12598.0 0.66
PWK/PhJ m 7545.0 1702.0   8 601.7 0.2256 5264.0, 11190.0 0.65
WSB/EiJ f 8402.0 1520.0   7 574.7 0.181 5289.0, 9703.0 0.49
WSB/EiJ m 8329.0 8100.0   7 3062.0 0.9726 3445.0, 26389.0 0.87


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 300.861125 1433.6105015152 3144.0894302258 -2542.3671802258
129S1/SvImJ m 517.9375 1433.6105015152 3361.1658052258 -2325.2908052258
A/J f 1683.0166666667 1655.3908179257 4966.093921446 -1600.0605881127
A/J m 2161.425 1433.6105015152 5004.6533052258 -681.8033052258
C57BL/6J f 5675.0 1532.5940922146 8714.5389115808 2635.4610884192
C57BL/6J m 5215.0 1655.3908179257 8498.0772547793 1931.9227452207
CAST/EiJ f 9898.1428571429 1532.5940922146 12937.6817687236 6858.6039455621
CAST/EiJ m 6799.4285714286 1532.5940922146 9838.9674830094 3759.8896598478
DBA/2J f 3797.3333333333 2341.0761457385 8440.3057133609 -845.6390466942
DBA/2J m 4306.5 2867.2210030304 9992.9566104515 -1379.9566104515
NOD/ShiLtJ f 14477.8 1813.3897849297 18074.2309409495 10881.3690590504
NOD/ShiLtJ m 11090.6 1813.3897849297 14687.0309409495 7494.1690590504
NZO/HlLtJ f 1348.49 1282.2602138582 3891.5507064145 -1194.5707064145
NZO/HlLtJ m 892.6777777778 1351.6209429355 3573.2991312267 -1787.9435756711
PWK/PhJ f 9235.875 1433.6105015152 12079.1033052258 6392.6466947742
PWK/PhJ m 7545.375 1433.6105015152 10388.6033052258 4702.1466947742
WSB/EiJ f 8402.2857142857 1532.5940922146 11441.8246258665 5362.7468027049
WSB/EiJ m 8328.5714285714 1532.5940922146 11368.1103401522 5289.0325169906


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 409.3993125 1013.7157072016 2419.8653275867 -1601.0667025867
A/J both 1922.2208333333 1094.9381067128 4093.772321123 -249.3306544563
C57BL/6J both 5445.0 1127.9587106322 7682.0400675817 3207.9599324183
CAST/EiJ both 8348.7857142857 1083.7076754114 10498.0642903449 6199.5071382266
DBA/2J both 4051.9166666667 1850.7831991055 7722.5086252017 381.3247081317
NOD/ShiLtJ both 12784.2 1282.2602138582 15327.2607064145 10241.1392935854
NZO/HlLtJ both 1120.5838888889 931.5404485885 2968.0746599806 -726.9068822028
PWK/PhJ both 8390.625 1013.7157072016 10401.0910150867 6380.1589849133
WSB/EiJ both 8365.4285714286 1083.7076754114 10514.7071474877 6216.1499953694




  GWAS USING LINEAR MIXED MODELS