Project measure / variable:   CSNA03   dist_f30_cont_in_d11

ID, description, units MPD:90364   dist_f30_cont_in_d11   distance traveled, first 30 min (pre-injection), on successive days, saline group, founders   [cm]  day 11  
Data set, strains CSNA03   inbred w/CC8   9 strains     sex: both     age: 8-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled, first 30 min (pre-injection), on successive days, saline group, founders day 11



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means7381.0   cm 5018.0   cm
Median of the strain means6422.0   cm 5872.0   cm
SD of the strain means± 5113.0 ± 2962.0
Coefficient of variation (CV)0.6928 0.5903
Min–max range of strain means455.0   –   15221.0   cm 608.3   –   8364.0   cm
Mean sample size per strain6.7   mice 6.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 192114583.4044 192114583.4044 10.4723 0.0016
strain 8 1704903019.7084 213112877.4636 11.6169 < 0.0001
sex:strain 8 185924602.9615 23240575.3702 1.2669 0.2691
Residuals 102 1871199834.7233 18345096.4189


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 455.0 484.5   8 171.3 1.0648 -1.35
129S1/SvImJ m 608.3 778.7   8 275.3 1.2802 -1.49
A/J f 1998.0 1049.0   5 469.0 0.5251 504.5, 2879.0 -1.05
A/J m 2287.0 2183.0   8 771.9 0.9548 713.3, 7394.0 -0.92
C57BL/6J f 6422.0 1027.0   7 388.2 0.16 5304.0, 8491.0 -0.19
C57BL/6J m 5629.0 1153.0   6 470.8 0.2049 3813.0, 6589.0 0.21
CAST/EiJ f 12224.0 3024.0   7 1143.0 0.2474 8721.0, 16058.0 0.95
CAST/EiJ m 8364.0 3735.0   7 1412.0 0.4466 4630.0, 15960.0 1.13
DBA/2J f 5147.0 1246.0   3 719.3 0.2421 3739.0, 6106.0 -0.44
DBA/2J m 5872.0 3721.0   2   2631.0 0.6337 3241.0, 8503.0 0.29
NOD/ShiLtJ f 15221.0 13222.0   5 5913.0 0.8687 6901.0, 38354.0 1.53
NOD/ShiLtJ m 7577.0 2149.0   5 961.1 0.2836 5009.0, 10210.0 0.86
NZO/HlLtJ f 3468.0 6103.0   10 1930.0 1.76 788.7, 20775.0 -0.77
NZO/HlLtJ m 977.9 606.5   9 202.2 0.6203 390.1, 2200.0 -1.36
PWK/PhJ f 9437.0 1865.0   8 659.4 0.1976 7120.0, 12896.0 0.4
PWK/PhJ m 7579.0 1867.0   8 660.3 0.2464 5540.0, 11908.0 0.86
WSB/EiJ f 12057.0 9604.0   7 3630.0 0.7966 5301.0, 33142.0 0.91
WSB/EiJ m 6271.0 405.6   7 153.3 0.0647 5694.0, 6712.0 0.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 454.99675 1514.3107515821 3458.6249457538 -2548.6314457538
129S1/SvImJ m 608.27 1514.3107515821 3611.8981957538 -2395.3581957538
A/J f 1997.5 1915.4684241123 5796.8225371537 -1801.8225371537
A/J m 2286.6125 1514.3107515821 5290.2406957538 -717.0156957538
C57BL/6J f 6421.7142857143 1618.8662884366 9632.7278930756 3210.7006783529
C57BL/6J m 5628.6666666667 1748.5754401253 9096.9577613947 2160.3755719386
CAST/EiJ f 12224.1428571428 1618.8662884366 15435.1564645042 9013.1292497815
CAST/EiJ m 8363.5714285714 1618.8662884366 11574.5850359328 5152.5578212101
DBA/2J f 5147.3333333333 2472.8591022577 10052.2376377555 242.4290289111
DBA/2J m 5872.0 3028.6215031641 11879.2563915076 -135.2563915076
NOD/ShiLtJ f 15221.2 1915.4684241123 19020.5225371536 11421.8774628463
NOD/ShiLtJ m 7576.8 1915.4684241123 11376.1225371536 3777.4774628463
NZO/HlLtJ f 3467.59 1354.4407118385 6154.1167299362 781.0632700638
NZO/HlLtJ m 977.8555555556 1427.7058683565 3809.7033760631 -1853.992264952
PWK/PhJ f 9437.25 1514.3107515821 12440.8781957538 6433.6218042462
PWK/PhJ m 7579.125 1514.3107515821 10582.7531957538 4575.4968042462
WSB/EiJ f 12056.7142857143 1618.8662884366 15267.7278930756 8845.7006783529
WSB/EiJ m 6270.7142857143 1618.8662884366 9481.7278930757 3059.7006783529


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 531.633375 1070.7794012674 2655.5192403806 -1592.2524903806
A/J both 2142.05625 1220.8763590274 4563.6587194224 -279.5462194224
C57BL/6J both 6025.1904761905 1191.453327836 8388.4325027522 3661.9484496288
CAST/EiJ both 10293.8571428571 1144.7113303878 12564.3866391046 8023.3276466096
DBA/2J both 5509.6666666667 1954.9667739534 9387.3339934512 1631.9993398821
NOD/ShiLtJ both 11399.0 1354.4407118385 14085.5267299362 8712.4732700637
NZO/HlLtJ both 2222.7227777778 983.9783646536 4174.4391985966 271.006356959
PWK/PhJ both 8508.1875 1070.7794012674 10632.0733653806 6384.3016346194
WSB/EiJ both 9163.7142857143 1144.7113303878 11434.2437819618 6893.1847894668




  GWAS USING LINEAR MIXED MODELS