Project measure / variable:   CSNA03   dist_f30_cont_in_d3

ID, description, units MPD:90340   dist_f30_cont_in_d3   distance traveled, first 30 min (pre-injection), on successive days, saline group, founders   [cm]  day 3  
Data set, strains CSNA03   inbred w/CC8   9 strains     sex: both     age: 8-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled, first 30 min (pre-injection), on successive days, saline group, founders day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means6313.0   cm 5056.0   cm
Median of the strain means5554.0   cm 5137.0   cm
SD of the strain means± 4667.0 ± 3149.0
Coefficient of variation (CV)0.7394 0.6228
Min–max range of strain means494.4   –   13120.0   cm 631.4   –   8357.0   cm
Mean sample size per strain6.9   mice 6.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 48094141.8335 48094141.8335 10.1836 0.0019
strain 8 1724017242.0616 215502155.2577 45.631 < 0.0001
sex:strain 8 74456436.7552 9307054.5944 1.9707 0.0574
Residuals 103 486439854.8257 4722717.0371


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 494.4 564.9   8 199.7 1.1426 -1.25
129S1/SvImJ m 631.4 1032.0   8 364.9 1.6349 -1.41
A/J f 1926.0 1088.0   7 411.2 0.5649 648.3, 3422.0 -0.94
A/J m 1824.0 679.7   8 240.3 0.3726 828.5, 2734.0 -1.03
C57BL/6J f 5554.0 968.9   7 366.2 0.1744 4367.0, 6774.0 -0.16
C57BL/6J m 5137.0 1089.0   5 487.1 0.212 3985.0, 6668.0 0.03
CAST/EiJ f 11209.0 1616.0   7 610.8 0.1442 9237.0, 13875.0 1.05
CAST/EiJ m 8076.0 3101.0   7 1172.0 0.384 4096.0, 14358.0 0.96
DBA/2J f 3613.0 1206.0   3 696.1 0.3337 2245.0, 4521.0 -0.58
DBA/2J m 4970.0 4790.0   2   3387.0 0.9638 1583.0, 8357.0 -0.03
NOD/ShiLtJ f 13120.0 8087.0   5 3617.0 0.6164 5996.0, 26460.0 1.46
NOD/ShiLtJ m 8357.0 1878.0   5 839.7 0.2247 5849.0, 10709.0 1.05
NZO/HlLtJ f 1692.0 663.1   10 209.7 0.3918 737.9, 2882.0 -0.99
NZO/HlLtJ m 1184.0 491.5   9 163.8 0.4153 414.3, 2002.0 -1.23
PWK/PhJ f 9592.0 1714.0   8 605.9 0.1786 7509.0, 11929.0 0.7
PWK/PhJ m 8251.0 1400.0   8 494.8 0.1696 6831.0, 10764.0 1.01
WSB/EiJ f 9613.0 2455.0   7 927.9 0.2554 5898.0, 13476.0 0.71
WSB/EiJ m 7072.0 892.7   7 337.4 0.1262 5830.0, 8409.0 0.64


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 494.419 768.3356230469 2018.2314923411 -1029.3934923411
129S1/SvImJ m 631.359875 768.3356230469 2155.1723673411 -892.4526173411
A/J f 1925.9714285714 821.3853312843 3554.9955051504 296.9473519925
A/J m 1824.0625 768.3356230469 3347.8749923411 300.2500076589
C57BL/6J f 5554.4285714286 821.3853312843 7183.4526480075 3925.4044948496
C57BL/6J m 5137.4 971.8762305091 7064.8872811263 3209.9127188737
CAST/EiJ f 11209.2857142857 821.3853312843 12838.3097908646 9580.2616377067
CAST/EiJ m 8075.5714285714 821.3853312843 9704.5955051504 6446.5473519925
DBA/2J f 3613.0 1254.6868184455 6101.3753799429 1124.6246200571
DBA/2J m 4970.0 1536.6712460938 8017.6249846821 1922.3750153179
NOD/ShiLtJ f 13119.6 971.8762305091 15047.0872811263 11192.1127188738
NOD/ShiLtJ m 8357.4 971.8762305091 10284.8872811263 6429.9127188738
NZO/HlLtJ f 1692.49 687.220273067 3055.4293271352 329.5506728648
NZO/HlLtJ m 1183.5444444444 724.3937723782 2620.2086398993 -253.1197510104
PWK/PhJ f 9592.375 768.3356230469 11116.1874923411 8068.5625076589
PWK/PhJ m 8250.625 768.3356230469 9774.4374923411 6726.8125076589
WSB/EiJ f 9612.5714285714 821.3853312843 11241.5955051504 7983.5473519925
WSB/EiJ m 7072.0 821.3853312843 8701.024076579 5442.975923421


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 562.8894375 543.2953292836 1640.3875840911 -514.6087090911
A/J both 1875.0169642857 562.3640929353 2990.3335061124 759.7004224591
C57BL/6J both 5345.9142857143 636.2423417766 6607.7509095465 4084.077661882
CAST/EiJ both 9642.4285714286 580.8071377183 10794.3225426937 8490.5346001634
DBA/2J both 4291.5 991.9170241195 6258.7334685266 2324.2665314734
NOD/ShiLtJ both 10738.5 687.220273067 12101.4393271352 9375.5606728648
NZO/HlLtJ both 1438.0172222222 499.2539537086 2428.1696877488 447.8647566956
PWK/PhJ both 8921.5 543.2953292836 9998.9981465911 7844.0018534089
WSB/EiJ both 8342.2857142857 580.8071377183 9494.1796855508 7190.3917430206




  GWAS USING LINEAR MIXED MODELS