Project measure / variable:   CSNA03   dist_f30_cont_in_d2

ID, description, units MPD:90334   dist_f30_cont_in_d2   distance traveled, first 30 min (pre-injection), on successive days, saline group, founders   [cm]  day 2  
Data set, strains CSNA03   inbred w/CC8   9 strains     sex: both     age: 8-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled, first 30 min (pre-injection), on successive days, saline group, founders day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means7794.0   cm 5186.0   cm
Median of the strain means5780.0   cm 6265.0   cm
SD of the strain means± 6773.0 ± 3410.0
Coefficient of variation (CV)0.869 0.6574
Min–max range of strain means698.3   –   19921.0   cm 815.2   –   9538.0   cm
Mean sample size per strain6.8   mice 6.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 189742869.6898 189742869.6898 6.6931 0.0111
strain 8 2651814463.7412 331476807.9677 11.6926 < 0.0001
sex:strain 8 339133848.9558 42391731.1195 1.4953 0.1681
Residuals 102 2891622045.899 28349235.7441


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 698.3 860.5   8 304.2 1.2324 -1.05
129S1/SvImJ m 815.2 1169.0   8 413.2 1.4336 55.47, 3550.0 -1.28
A/J f 1384.0 725.3   6 296.1 0.5242 424.4, 2381.0 -0.95
A/J m 1338.0 675.9   8 239.0 0.5051 54.52, 2158.0 -1.13
C57BL/6J f 5780.0 1134.0   7 428.6 0.1962 4195.0, 7286.0 -0.3
C57BL/6J m 6265.0 487.4   6 199.0 0.0778 5684.0, 6887.0 0.32
CAST/EiJ f 15907.0 10329.0   7 3904.0 0.6493 10157.0, 39148.0 1.2
CAST/EiJ m 8465.0 2511.0   7 949.2 0.2967 4891.0, 12303.0 0.96
DBA/2J f 4181.0 1429.0   3 824.8 0.3417 2534.0, 5089.0 -0.53
DBA/2J m 3928.0 2881.0   2   2037.0 0.7337 1890.0, 5965.0 -0.37
NOD/ShiLtJ f 19921.0 22690.0   5 10147.0 1.139 7566.0, 60391.0 1.79
NOD/ShiLtJ m 9538.0 1413.0   5 632.0 0.1482 7361.0, 11317.0 1.28
NZO/HlLtJ f 1943.0 750.9   10 237.5 0.3865 667.4, 3598.0 -0.86
NZO/HlLtJ m 1245.0 458.7   9 152.9 0.3686 617.6, 1920.0 -1.16
PWK/PhJ f 9963.0 1706.0   8 603.1 0.1712 6955.0, 13007.0 0.32
PWK/PhJ m 7427.0 1487.0   7 562.0 0.2002 5587.0, 9099.0 0.66
WSB/EiJ f 10367.0 3099.0   7 1171.0 0.2989 6250.0, 14188.0 0.38
WSB/EiJ m 7656.0 1039.0   7 392.8 0.1357 6056.0, 8825.0 0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 698.28475 1882.4596856277 4432.1346108783 -3035.5651108783
129S1/SvImJ m 815.15875 1882.4596856277 4549.0086108783 -2918.6911108783
A/J f 1383.5 2173.6772124715 5694.9784445835 -2927.9784445834
A/J m 1338.24 1882.4596856277 5072.0898608783 -2395.6098608783
C57BL/6J f 5779.7142857143 2012.4340537237 9771.3676894457 1788.0608819828
C57BL/6J m 6264.8333333333 2173.6772124715 10576.3117779168 1953.3548887499
CAST/EiJ f 15906.8571428572 2012.4340537237 19898.5105465886 11915.2037391257
CAST/EiJ m 8465.1428571429 2012.4340537237 12456.7962608743 4473.4894534114
DBA/2J f 4180.6666666667 3074.0437940986 10278.0179568759 -1916.6846235425
DBA/2J m 3927.5 3764.9193712554 11395.1997217566 -3540.1997217566
NOD/ShiLtJ f 19921.1999999999 2381.1440840112 24644.1880005912 15198.2119994087
NOD/ShiLtJ m 9538.3999999999 2381.1440840112 14261.3880005912 4815.4119994086
NZO/HlLtJ f 1943.04 1683.7231287866 5282.6968426808 -1396.6168426808
NZO/HlLtJ m 1244.6777777778 1774.8000120235 4764.9851865238 -2275.6296309682
PWK/PhJ f 9963.0 1882.4596856277 13696.8498608783 6229.1501391217
PWK/PhJ m 7427.2857142857 2012.4340537237 11418.9391180172 3435.6323105543
WSB/EiJ f 10367.1428571429 2012.4340537237 14358.7962608743 6375.4894534114
WSB/EiJ m 7656.2857142857 2012.4340537237 11647.9391180172 3664.6323105543


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 756.72175 1331.1000090176 3396.9523065595 -1883.5088065595
A/J both 1360.87 1437.7523336819 4212.6449368458 -1490.9049368458
C57BL/6J both 6022.2738095238 1481.1113601452 8960.0511697755 3084.4964492722
CAST/EiJ both 12186.0 1423.0057660788 15008.5251899249 9363.4748100751
DBA/2J both 4054.0833333333 2430.2450041143 8874.4627761402 -766.2961094735
NOD/ShiLtJ both 14729.7999999999 1683.7231287866 18069.4568426807 11390.1431573192
NZO/HlLtJ both 1593.8588888889 1223.1964945471 4020.0633361138 -832.3455583361
PWK/PhJ both 8695.1428571429 1377.819408395 11428.0411208504 5962.2445934354
WSB/EiJ both 9011.7142857143 1423.0057660788 11834.2394756392 6189.1890957894




  GWAS USING LINEAR MIXED MODELS