Project measure / variable:   CSNA03   dist_d19_d11_cont_in

ID, description, units MPD:90322   dist_d19_d11_cont_in   distance traveled, last 60 min (post-injection), Day 19 minus Day 11, saline control, founders   [cm]  
Data set, strains CSNA03   inbred w/CC8   9 strains     sex: both     age: 8-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled, last 60 min (post-injection), Day 19 minus Day 11, saline control, founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means-476.9   cm -17.452   cm
Median of the strain means63.04   cm 85.22   cm
SD of the strain means± 2164.0 ± 2160.0
Coefficient of variation (CV)-4.5383 -123.7507
Min–max range of strain means-3821.0   –   2915.0   cm -3747.0   –   2869.0   cm
Mean sample size per strain6.6   mice 6.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 13148131.5821 13148131.5821 0.7591 0.3857
strain 8 396526858.5768 49565857.3221 2.8617 0.0066
sex:strain 8 70280833.5867 8785104.1983 0.5072 0.8484
Residuals 101 1749351012.1068 17320307.0506


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 189.1 804.4   8 284.4 4.2548 -384.3, 2150.0 0.31
129S1/SvImJ m 85.22 211.9   8 74.92 2.4865 -281.0, 365.5 0.05
A/J f 244.8 536.5   5 239.9 2.1914 -635.0, 612.9 0.33
A/J m 189.6 684.0   8 241.8 3.6081 -821.9, 1246.0 0.1
C57BL/6J f -943.0 1810.0   7 684.3 -1.92 -4034.0, 1604.0 -0.22
C57BL/6J m -231.9 1255.0   6 512.5 -5.4147 -2310.0, 1410.0 -0.1
CAST/EiJ f 1357.0 7644.0   7 2889.0 5.6323 -13074.0, 9606.0 0.85
CAST/EiJ m 2313.0 2001.0   7 756.3 0.8653 -9.9559, 5736.0 1.08
DBA/2J f 63.04 1274.0   3 735.4 20.2058 -1135.0, 1401.0 0.25
DBA/2J m -2872.0 79.9   2   56.5 -0.0278 -2928.0, -2815.0 -1.32
NOD/ShiLtJ f -3821.0 13542.0   5 6056.0 -3.5439 -25942.0, 7381.0 -1.55
NOD/ShiLtJ m 1160.0 1463.0   5 654.2 1.2613 -1319.0, 2333.0 0.55
NZO/HlLtJ f -672.0 2411.0   10 762.5 -3.5882 -7359.0, 1047.0 -0.09
NZO/HlLtJ m 77.01 411.7   9 137.2 5.3458 -534.4, 591.0 0.04
PWK/PhJ f -3625.0 6363.0   8 2250.0 -1.7553 -16929.0, 3209.0 -1.45
PWK/PhJ m -3747.0 4293.0   8 1518.0 -1.1457 -11109.0, 2054.0 -1.73
WSB/EiJ f 2915.0 3949.0   6 1612.0 1.3544 -2661.0, 7065.0 1.57
WSB/EiJ m 2869.0 2844.0   7 1075.0 0.9914 9.6776, 7811.0 1.34


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 189.053625 1471.406939402 3107.9291886558 -2729.8219386558
129S1/SvImJ m 85.2182125 1471.406939402 3004.0937761558 -2833.6573511558
A/J f 244.822 1861.1989173951 3936.939995104 -3447.295995104
A/J m 189.5825 1471.406939402 3108.4580636558 -2729.2930636558
C57BL/6J f -942.9571428571 1573.0001839325 2177.4520896647 -4063.366375379
C57BL/6J m -231.8583333333 1699.0343851025 3138.568851482 -3602.2855181487
CAST/EiJ f 1357.1428571429 1573.0001839325 4477.5520896647 -1763.266375379
CAST/EiJ m 2312.5634428571 1573.0001839325 5432.972675379 -807.8457896647
DBA/2J f 63.04 2402.7974703501 4829.5438357568 -4703.4638357568
DBA/2J m -2871.5 2942.813878804 2966.2511273115 -8709.2511273115
NOD/ShiLtJ f -3821.2 1861.1989173951 -129.082004896 -7513.317995104
NOD/ShiLtJ m 1159.8 1861.1989173951 4851.917995104 -2532.317995104
NZO/HlLtJ f -671.9595 1316.0663756271 1938.7621712789 -3282.6811712789
NZO/HlLtJ m 77.01 1387.2557663148 2828.9522726676 -2674.9322726676
PWK/PhJ f -3624.95 1471.406939402 -706.0744363442 -6543.8255636558
PWK/PhJ m -3747.10625 1471.406939402 -828.2306863442 -6665.9818136558
WSB/EiJ f 2915.4333333333 1699.0343851025 6285.8605181487 -454.993851482
WSB/EiJ m 2868.5825142857 1573.0001839325 5988.9917468076 -251.8267182362


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 137.13591875 1040.4418247361 2201.0926232507 -1926.8207857507
A/J both 217.20225 1186.2861998094 2570.4749629403 -2136.0704629403
C57BL/6J both -587.4077380952 1157.6967889318 1709.151274131 -2883.9667503215
CAST/EiJ both 1834.85315 1112.2790968664 4041.3156783933 -371.6093783933
DBA/2J both -1404.23 1899.5781905993 2364.0221492302 -5172.4821492302
NOD/ShiLtJ both -1330.7 1316.0663756271 1280.0216712789 -3941.4216712789
NZO/HlLtJ both -297.47475 956.1000557251 1599.1705724694 -2194.1200724694
PWK/PhJ both -3686.028125 1040.4418247361 -1622.0714204993 -5749.9848295007
WSB/EiJ both 2892.0079238095 1157.6967889318 5188.5669360358 595.4489115833




  GWAS USING LINEAR MIXED MODELS