Project measure / variable:   CSNA03   dist_d12_d2_cont_in

ID, description, units MPD:90316   dist_d12_d2_cont_in   distance traveled, last 60 min (post-injection), Day 12 minus Day 2, saline control, founders   [cm]  
Data set, strains CSNA03   inbred w/CC8   9 strains     sex: both     age: 8-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled, last 60 min (post-injection), Day 12 minus Day 2, saline control, founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means-1090.0   cm -1292.0   cm
Median of the strain means-186.7   cm -452.8   cm
SD of the strain means± 2750.0 ± 2271.0
Coefficient of variation (CV)-2.5242 -1.7581
Min–max range of strain means-5614.0   –   2822.0   cm -4155.0   –   2120.0   cm
Mean sample size per strain6.4   mice 6.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1224104.4446 1224104.4446 0.1062 0.7452
strain 8 473535639.6628 59191954.9579 5.1359 < 0.0001
sex:strain 8 74669198.0038 9333649.7505 0.8099 0.5955
Residuals 98 1129465324.1346 11525156.3687


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f -186.7 626.3   8 221.4 -3.3556 -908.9, 982.8 0.33
129S1/SvImJ m -276.7 669.4   8 236.7 -2.4191 -1750.0, 388.7 0.45
A/J f 397.5 969.2   5 433.4 2.4383 -555.5, 1612.0 0.54
A/J m 1252.0 3467.0   8 1226.0 2.7692 -327.8, 9784.0 1.12
C57BL/6J f -569.1 2874.0   7 1086.0 -5.0493 -5268.0, 2816.0 0.19
C57BL/6J m -3660.0 3456.0   6 1411.0 -0.9443 -7386.0, 2083.0 -1.04
CAST/EiJ f 2822.0 3590.0   6 1466.0 1.2721 -336.7, 7253.0 1.42
CAST/EiJ m -452.8 3963.0   7 1498.0 -8.7512 -4391.0, 6160.0 0.37
DBA/2J f 1183.0 1865.0   3 1077.0 1.5765 -673.9, 3056.0 0.83
DBA/2J m 2120.0 978.6   2   692.0 0.4616 1428.0, 2812.0 1.5
NOD/ShiLtJ f -5614.0 850.9   4 425.5 -0.1516 -6353.0, -4631.0 -1.64
NOD/ShiLtJ m -4155.0 2114.0   5 945.4 -0.5088 -6377.0, -1115.0 -1.26
NZO/HlLtJ f -120.1 883.6   10 279.4 -7.3564 -1338.0, 1662.0 0.35
NZO/HlLtJ m -255.3 393.7   9 131.2 -1.5423 -1196.0, 224.9 0.46
PWK/PhJ f -3856.0 6844.0   8 2420.0 -1.7747 -13477.0, 8726.0 -1.01
PWK/PhJ m -3136.0 6751.0   7 2552.0 -2.1528 -10723.0, 4297.0 -0.81
WSB/EiJ f -3863.0 2430.0   7 918.5 -0.6291 -8132.0, -1170.0 -1.01
WSB/EiJ m -3062.0 4354.0   6 1778.0 -1.4222 -9369.0, 1181.0 -0.78


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f -186.65 1200.2685308255 2195.243836094 -2568.543836094
129S1/SvImJ m -276.7125 1200.2685308255 2105.181336094 -2658.606336094
A/J f 397.48 1518.2329444931 3410.3638667091 -2615.4038667091
A/J m 1252.1499625 1200.2685308255 3634.043798594 -1129.743873594
C57BL/6J f -569.1142857143 1283.1410327073 1977.2373332378 -3115.4659046664
C57BL/6J m -3659.8333333333 1385.9507187439 -909.4592384334 -6410.2074282333
CAST/EiJ f 2822.01 1385.9507187439 5572.3840949 71.6359051
CAST/EiJ m -452.8 1283.1410327073 2093.5516189521 -2999.1516189521
DBA/2J f 1183.0333333333 1960.0303032284 5072.6496799405 -2706.5830132738
DBA/2J m 2120.0 2400.5370616511 6883.787672188 -2643.787672188
NOD/ShiLtJ f -5614.5 1697.4360347831 -2245.993432863 -8983.006567137
NOD/ShiLtJ m -4154.8 1518.2329444931 -1141.9161332909 -7167.6838667091
NZO/HlLtJ f -120.109 1073.5528104719 2010.3216130776 -2250.5396130776
NZO/HlLtJ m -255.2688888889 1131.6240231887 1990.4021558691 -2500.9399336469
PWK/PhJ f -3856.225 1200.2685308255 -1474.331163906 -6238.118836094
PWK/PhJ m -3135.8571428571 1283.1410327073 -589.505523905 -5682.2087618093
WSB/EiJ f -3863.2857142857 1283.1410327073 -1316.9340953336 -6409.6373332378
WSB/EiJ m -3061.5036666667 1385.9507187439 -311.1295717667 -5811.8777615666


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both -231.68125 848.7180173916 1452.5720335685 -1915.9345335685
A/J both 824.81498125 967.6874262687 2745.1591848173 -1095.5292223173
C57BL/6J both -2114.4738095238 944.366229887 -240.4097611761 -3988.5378578715
CAST/EiJ both 1184.605 944.366229887 3058.6690483477 -689.4590483477
DBA/2J both 1651.5166666667 1549.5400102881 4726.5283865421 -1423.4950532087
NOD/ShiLtJ both -4884.65 1138.6747083698 -2624.9870999682 -7144.3129000319
NZO/HlLtJ both -187.6889444444 779.9180352335 1360.0330136606 -1735.4109025495
PWK/PhJ both -3496.0410714286 878.5066100929 -1752.6732951287 -5239.4088477284
WSB/EiJ both -3462.3946904762 944.366229887 -1588.3306421285 -5336.4587388239




  GWAS USING LINEAR MIXED MODELS