Project measure / variable:   CSNA03   dist_d3_d2_cont_in

ID, description, units MPD:90304   dist_d3_d2_cont_in   distance traveled, last 60 min (post-injection), Day 3 minus Day 2, saline control, founders   [cm]  
Data set, strains CSNA03   inbred w/CC8   9 strains     sex: both     age: 8-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled, last 60 min (post-injection), Day 3 minus Day 2, saline control, founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means-5.0422   cm -556.0   cm
Median of the strain means-79.14   cm -106.0   cm
SD of the strain means± 502.1 ± 1582.0
Coefficient of variation (CV)-99.5872 -2.8459
Min–max range of strain means-1025.0   –   684.3   cm -3479.0   –   1905.0   cm
Mean sample size per strain6.4   mice 6.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5288935.674 5288935.674 0.9342 0.3362
strain 8 78461913.8955 9807739.2369 1.7323 0.1003
sex:strain 8 50874352.7396 6359294.0925 1.1232 0.3546
Residuals 98 554845738.34 5661691.2076


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f -92.19 370.2   8 130.9 -4.0152 -577.2, 535.5 -0.17
129S1/SvImJ m -267.4 307.7   8 108.8 -1.1507 -843.3, 0.0 0.18
A/J f -79.14 625.5   6 255.4 -7.9039 -893.9, 716.4 -0.15
A/J m -66.56 696.9   8 246.4 -10.4703 -1134.0, 1262.0 0.31
C57BL/6J f 684.3 1696.0   7 640.9 2.4778 -1068.0, 3084.0 1.37
C57BL/6J m -2166.0 1886.0   5 843.3 -0.8705 -4733.0, -755.5 -1.02
CAST/EiJ f 279.9 3612.0   5 1615.0 12.9056 -5392.0, 4008.0 0.57
CAST/EiJ m 370.1 1380.0   7 521.6 3.7289 -1970.0, 2278.0 0.59
DBA/2J f -253.4 1049.0   3 605.9 -4.1407 -1435.0, 570.1 -0.49
DBA/2J m 255.5 2881.0   2   2037.0 11.2777 -1782.0, 2293.0 0.51
NOD/ShiLtJ f -84.58 2376.0   4 1188.0 -28.0956 -3416.0, 1918.0 -0.16
NOD/ShiLtJ m -3479.0 2235.0   5 999.4 -0.6424 -7158.0, -1188.0 -1.85
NZO/HlLtJ f -50.97 461.4   10 145.9 -9.0518 -697.5, 781.3 -0.09
NZO/HlLtJ m -106.0 371.1   9 123.7 -3.5019 -613.1, 427.2 0.28
PWK/PhJ f -1025.0 4199.0   8 1485.0 -4.098 -4682.0, 8198.0 -2.03
PWK/PhJ m -1450.0 3081.0   7 1164.0 -2.1245 -6706.0, 3857.0 -0.56
WSB/EiJ f 575.7 5054.0   7 1910.0 8.778 -8649.0, 7979.0 1.16
WSB/EiJ m 1905.0 3385.0   7 1279.0 1.7772 -2634.0, 6489.0 1.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f -92.188 841.2558474946 1577.256850268 -1761.6328502681
129S1/SvImJ m -267.391 841.2558474946 1402.0538502681 -1936.8358502681
A/J f -79.14 971.3985800167 1848.568867399 -2006.848867399
A/J m -66.558125 841.2558474946 1602.8867252681 -1736.0029752681
C57BL/6J f 684.3198571429 899.34033027 2469.0314730906 -1100.3917588049
C57BL/6J m -2166.2 1064.1138292073 -54.5007380457 -4277.8992619543
CAST/EiJ f 279.86 1064.1138292073 2391.5592619543 -1831.8392619543
CAST/EiJ m 370.0571428571 899.34033027 2154.7687588049 -1414.6544730906
DBA/2J f -253.4333333333 1373.7650463297 2472.7586912492 -2979.6253579159
DBA/2J m 255.5 1682.5116949893 3594.3897005361 -3083.3897005361
NOD/ShiLtJ f -84.575 1189.7154289526 2276.376548883 -2445.526548883
NOD/ShiLtJ m -3478.6 1064.1138292073 -1366.9007380457 -5590.2992619543
NZO/HlLtJ f -50.9692 752.4421045869 1442.2276679545 -1544.1660679545
NZO/HlLtJ m -105.9744444444 793.1436193017 1467.9932548109 -1679.9421436998
PWK/PhJ f -1024.625 841.2558474946 644.8198502681 -2694.0698502681
PWK/PhJ m -1450.1857142857 899.34033027 334.5259016621 -3234.8973302335
WSB/EiJ f 575.7285714286 899.34033027 2360.4401873763 -1208.9830445192
WSB/EiJ m 1904.5714285714 899.34033027 3689.2830445192 119.8598126237


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both -179.7895 594.8577144763 1000.6862744415 -1360.2652744415
A/J both -72.8490625 642.5197666614 1202.2105033179 -1347.9086283179
C57BL/6J both -740.9400714286 696.6260243417 641.4916018412 -2123.3717446983
CAST/EiJ both 324.9585714286 696.6260243417 1707.3902446983 -1057.4731018412
DBA/2J both 1.0333333333 1086.0566290821 2156.2773675 -2154.2107008333
NOD/ShiLtJ both -1781.5875 798.0853719055 -197.8130535343 -3365.3619464657
NZO/HlLtJ both -78.4718222222 546.6365157932 1006.3105528153 -1163.2541972598
PWK/PhJ both -1237.4053571429 615.7362322038 -15.4968437727 -2459.313870513
WSB/EiJ both 1240.15 635.9296461285 2502.1316860991 -21.8316860991




  GWAS USING LINEAR MIXED MODELS