Project measure / variable:   CSNA03   light_dark_transitions_LD_in

ID, description, units MPD:90262   light_dark_transitions_LD_in   total number of light-dark transitions, 20 min test (LD box), founders   [n]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure light-dark box
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  STRAIN COMPARISON PLOT
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CSNA03 - total number of light-dark transitions, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means84.57   n 80.19   n
Median of the strain means74.28   n 79.49   n
SD of the strain means± 41.691 ± 36.167
Coefficient of variation (CV)0.493 0.451
Min–max range of strain means32.0   –   139.0   n 27.049   –   129.1   n
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 7864.4817 7864.4817 1.588 0.208
strain 9 1183203.5413 131467.0601 26.5451 < 0.0001
sex:strain 9 78379.7629 8708.8625 1.7584 0.0724
Residuals 840 4160172.163 4952.5859


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 32.0 47.62   49 6.8029 1.4881 1.0, 232.0 -1.26
129S1/SvImJ m 40.939 55.22   49 7.8887 1.3489 1.0, 276.0 -1.09
A/J f 38.317 46.999   60 6.0675 1.2266 1.0, 251.0 -1.11
A/J m 27.049 30.333   61 3.8838 1.1214 1.0, 120.0 -1.47
C57BL/6J f 72.98 27.634   60 3.5675 0.3786 1.0, 159.0 -0.28
C57BL/6J m 87.53 61.41   59 7.9952 0.7017 34.0, 488.0 0.2
C57BL/6NJ f 57.31 23.51   13 6.5206 0.4102 20.0, 109.0 -0.65
C57BL/6NJ m 58.54 18.804   13 5.2154 0.3212 17.0, 85.0 -0.6
CAST/EiJ f 139.0 78.21   33 13.615 0.5627 42.0, 545.0 1.31
CAST/EiJ m 129.1 99.83   30 18.226 0.7734 17.0, 566.0 1.35
DBA/2J f 75.58 30.26   24 6.1767 0.4003 25.0, 146.0 -0.22
DBA/2J m 82.92 24.171   24 4.934 0.2915 44.0, 145.0 0.08
NOD/ShiLtJ f 118.9 54.96   47 8.0171 0.4621 38.0, 359.0 0.82
NOD/ShiLtJ m 120.2 59.26   44 8.9341 0.4929 58.0, 423.0 1.11
NZO/HlLtJ f 48.979 25.562   47 3.7286 0.5219 9.0, 144.0 -0.85
NZO/HlLtJ m 53.13 23.612   46 3.4814 0.4444 10.0, 124.0 -0.75
PWK/PhJ f 129.5 179.7   47 26.219 1.3881 46.0, 833.0 1.08
PWK/PhJ m 76.06 61.98   48 8.9454 0.8148 4.0, 460.0 -0.11
WSB/EiJ f 133.1 85.45   55 11.522 0.6422 67.0, 657.0 1.16
WSB/EiJ m 126.4 101.9   51 14.271 0.8063 61.0, 683.0 1.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 32.0 10.0535158925 51.7329617864 12.2670382136
129S1/SvImJ m 40.9387755102 10.0535158925 60.6717372966 21.2058137238
A/J f 38.3166666667 9.0853232453 56.149267553 20.4840657803
A/J m 27.0491803279 9.0105456507 44.7350083406 9.3633523151
C57BL/6J f 72.9833333333 9.0853232453 90.8159342197 55.150732447
C57BL/6J m 87.5254237288 9.1619939991 105.5085133666 69.5423340911
C57BL/6NJ f 57.3076923077 19.5184053342 95.6182645202 18.9971200952
C57BL/6NJ m 58.5384615385 19.5184053342 96.849033751 20.2278893259
CAST/EiJ f 139.0 12.2506473648 163.0454741299 114.9545258701
CAST/EiJ m 129.0666666667 12.848587352 154.2857726925 103.8475606408
DBA/2J f 75.5833333333 14.365157367 103.7791510361 47.3875156306
DBA/2J m 82.9166666667 14.365157367 111.1124843694 54.7208489639
NOD/ShiLtJ f 118.9361702128 10.2651920713 139.0846083352 98.7877320904
NOD/ShiLtJ m 120.2272727273 10.6093718307 141.0512641698 99.4032812848
NZO/HlLtJ f 48.9787234043 10.2651920713 69.1271615266 28.8302852819
NZO/HlLtJ m 53.1304347826 10.376170346 73.4967001882 32.764169377
PWK/PhJ f 129.4893617021 10.2651920713 149.6377998245 109.3409235797
PWK/PhJ m 76.0625 10.157700187 95.9999538987 56.1250461013
WSB/EiJ f 133.0545454545 9.4893106448 151.6800896259 114.4290012832
WSB/EiJ m 126.3921568627 9.8544166552 145.7343282346 107.0499854909


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 36.4693877551 7.1089092624 50.4226988471 22.5160766631
A/J both 32.6829234973 6.3979104283 45.2406916794 20.1251553151
C57BL/6J both 80.2543785311 6.4514578296 92.9172491307 67.5915079315
C57BL/6NJ both 57.9230769231 13.8015967698 85.0127423257 30.8334115205
CAST/EiJ both 134.0333333333 8.8764373174 151.4559345662 116.6107321005
DBA/2J both 79.25 10.157700187 99.1874538987 59.3125461013
NOD/ShiLtJ both 119.58172147 7.3812759551 134.0696317607 105.0938111793
NZO/HlLtJ both 51.0545790934 7.2979291465 65.3788969249 36.730261262
PWK/PhJ both 102.7759308511 7.2206828166 116.9486301947 88.6032315075
WSB/EiJ both 129.7233511586 6.840258477 143.1493566057 116.2973457116




  GWAS USING LINEAR MIXED MODELS