Project measure / variable:   CSNA03   pct_amb_counts_light_LD_do

ID, description, units MPD:90225   pct_amb_counts_light_LD_do   percentage of ambulatory counts in light, 20 min test (LD box), DO   [%]  
Data set, strains CSNA03   DO population w/par   9 strains     sex: both     age: 4-25wks
Procedure light-dark box
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Plot Options Bins number: (min: 10, max: 40)


Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means37.7   % 36.502   %
Median of the strain means41.001   % 38.842   %
SD of the strain means± 8.9893 ± 10.058
Coefficient of variation (CV)0.2384 0.2755
Min–max range of strain means17.409   –   46.991   % 20.155   –   49.754   %
Mean sample size per strain210.3   mice 199.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 9.5832 9.5832 0.06 0.8064
strain 8 81352.0726 10169.0091 63.7203 < 0.0001
sex:strain 8 5829.2533 728.6567 4.5659 < 0.0001
Residuals 3666 585049.9464 159.5881


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 34.4 36.232   48 5.2297 1.0533 -0.37
129S1/SvImJ m 32.418 33.72   49 4.8171 1.0401 -0.41
A/J f 31.901 35.433   60 4.5743 1.1107 -0.65
A/J m 20.155 27.754   61 3.5535 1.377 -1.63
C57BL/6J f 41.903 13.208   60 1.7051 0.3152 21.533, 100.0 0.47
C57BL/6J m 38.842 6.0403   59 0.78638 0.1555 26.68, 57.98 0.23
CAST/EiJ f 45.569 6.3321   33 1.1023 0.139 27.024, 65.09 0.88
CAST/EiJ m 44.138 9.1997   30 1.6796 0.2084 3.252, 61.33 0.76
J:DO f 41.125 10.116   1496 0.26154 0.246 0.38
J:DO m 41.847 10.566   1403 0.2821 0.2525 0.53
NOD/ShiLtJ f 46.991 11.187   47 1.6318 0.2381 1.3473, 68.69 1.03
NOD/ShiLtJ m 49.754 8.2883   44 1.2495 0.1666 32.101, 78.36 1.32
NZO/HlLtJ f 17.409 8.8299   47 1.288 0.5072 1.0466, 47.469 -2.26
NZO/HlLtJ m 21.411 7.8072   46 1.1511 0.3646 0.69204, 34.795 -1.5
PWK/PhJ f 41.001 6.3297   47 0.92329 0.1544 29.53, 53.38 0.37
PWK/PhJ m 38.311 5.1285   48 0.74024 0.1339 20.0, 45.388 0.18
WSB/EiJ f 38.997 5.8387   55 0.78729 0.1497 24.275, 56.13 0.14
WSB/EiJ m 41.643 7.5664   51 1.0595 0.1817 21.466, 66.2 0.51


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 34.4001833333 1.8233902279 37.97514281 30.8252238567
129S1/SvImJ m 32.4184220408 1.8046882953 35.9567142971 28.8801297845
A/J f 31.9012996667 1.6308897996 35.0988406293 28.7037587041
A/J m 20.1550331148 1.6174666101 23.3262564203 16.9838098093
C57BL/6J f 41.9034166667 1.6308897996 45.1009576293 38.7058757041
C57BL/6J m 38.8416440678 1.6446528268 42.0661689768 35.6171191588
CAST/EiJ f 45.569030303 2.1990913572 49.8805936575 41.2574669486
CAST/EiJ m 44.1377333333 2.3064264734 48.6597391289 39.6157275378
J:DO f 41.1248584358 0.3266137356 41.7652210151 40.4844958566
J:DO m 41.8466565431 0.3372651025 42.5079023125 41.1854107737
NOD/ShiLtJ f 46.9911553191 1.8426858999 50.6039461083 43.37836453
NOD/ShiLtJ m 49.7541363636 1.9044689806 53.4880597586 46.0202129687
NZO/HlLtJ f 17.4086787234 1.8426858999 21.0214695126 13.7958879342
NZO/HlLtJ m 21.4105182609 1.8626074076 25.0623673829 17.7586691389
PWK/PhJ f 41.0007021277 1.8426858999 44.6134929168 37.3879113385
PWK/PhJ m 38.3107291667 1.8233902279 41.8856886433 34.73576969
WSB/EiJ f 38.9974 1.7034088407 42.3371226136 35.6576773864
WSB/EiJ m 41.6430392157 1.7689483544 45.1112593403 38.1748190911


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 33.4093026871 1.2827365051 35.924250368 30.8943550062
A/J both 26.0281663907 1.148477228 28.2798838164 23.776448965
C57BL/6J both 40.3725303672 1.1580894244 42.6430935736 38.1019671609
CAST/EiJ both 44.8533818182 1.5933930678 47.9774062649 41.7293573715
J:DO both 41.4857574895 0.2347468219 41.9460047601 41.0255102189
NOD/ShiLtJ both 48.3726458414 1.3249993796 50.9704545914 45.7748370914
NZO/HlLtJ both 19.4095984921 1.3100379461 21.9780736865 16.8411232978
PWK/PhJ both 39.6557156472 1.2961715983 42.1970043235 37.1144269708
WSB/EiJ both 40.3202196078 1.2278823192 42.7276195522 37.9128196635




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA