Project measure / variable:   CSNA03   amb_counts_light_LD_in

ID, description, units MPD:90217   amb_counts_light_LD_in   ambulatory counts in light, 20 min test (LD box), founders   [n]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure light-dark box
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  STRAIN COMPARISON PLOT
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CSNA03 - ambulatory counts in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means930.3   n 821.5   n
Median of the strain means810.1   n 766.5   n
SD of the strain means± 629.0 ± 552.1
Coefficient of variation (CV)0.6761 0.6721
Min–max range of strain means161.5   –   1797.0   n 121.5   –   1602.0   n
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3224011.1872 3224011.1872 5.8951 0.0154
strain 9 283518605.4449 31502067.2717 57.6018 < 0.0001
sex:strain 9 6603758.8189 733750.9799 1.3417 0.2111
Residuals 840 459390580.4047 546893.5481


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 161.5 355.7   49 50.81 2.2025 -1.22
129S1/SvImJ m 203.9 391.2   49 55.88 1.9187 -1.12
A/J f 221.5 557.8   60 72.02 2.5189 -1.13
A/J m 121.5 216.6   61 27.739 1.7827 -1.27
C57BL/6J f 834.8 295.2   60 38.104 0.3536 132.0, 1925.0 -0.15
C57BL/6J m 794.0 374.5   59 48.756 0.4717 381.0, 3200.0 -0.05
C57BL/6NJ f 785.5 305.4   13 84.71 0.3888 316.0, 1510.0 -0.23
C57BL/6NJ m 739.0 217.1   13 60.21 0.2938 248.0, 1078.0 -0.15
CAST/EiJ f 1786.0 1463.0   33 254.6 0.8189 287.0, 9437.0 1.36
CAST/EiJ m 1528.0 1156.0   30 211.0 0.7561 4.0, 6811.0 1.28
DBA/2J f 708.5 262.5   24 53.59 0.3705 241.0, 1412.0 -0.35
DBA/2J m 667.9 266.5   24 54.4 0.3991 271.0, 1074.0 -0.28
NOD/ShiLtJ f 1797.0 1239.0   47 180.7 0.6894 18.0, 6710.0 1.38
NOD/ShiLtJ m 1602.0 435.2   44 65.61 0.2717 986.0, 3085.0 1.41
NZO/HlLtJ f 235.4 203.6   47 29.705 0.8651 11.0, 1294.0 -1.1
NZO/HlLtJ m 219.2 124.3   46 18.331 0.5673 6.0, 624.0 -1.09
PWK/PhJ f 1440.0 1407.0   47 205.2 0.9768 517.0, 6850.0 0.81
PWK/PhJ m 917.7 390.9   48 56.42 0.4259 4.0, 2509.0 0.17
WSB/EiJ f 1333.0 663.1   55 89.42 0.4976 697.0, 5001.0 0.64
WSB/EiJ m 1422.0 1386.0   51 194.1 0.9749 580.0, 9416.0 1.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 161.4897959184 105.6460733695 368.8510763861 -45.8714845493
129S1/SvImJ m 203.8775510204 105.6460733695 411.2388314881 -3.4837294473
A/J f 221.4666666667 95.4719459755 408.8582500433 34.0750832901
A/J m 121.5245901639 94.6861552797 307.3738297538 -64.3246494259
C57BL/6J f 834.7666666667 95.4719459755 1022.1582500433 647.3750832901
C57BL/6J m 794.0169491525 96.2776306896 982.9899241383 605.0439741668
C57BL/6NJ f 785.5384615385 205.1066416996 1188.1201619158 382.9567611611
C57BL/6NJ m 739.0 205.1066416996 1141.5817003774 336.4182996227
CAST/EiJ f 1786.303030303 128.7343456916 2038.9817897816 1533.6242708245
CAST/EiJ m 1528.4333333333 135.0177208247 1793.4450520191 1263.4216146476
DBA/2J f 708.5 150.9544009656 1004.7921089077 412.2078910923
DBA/2J m 667.875 150.9544009656 964.1671089077 371.5828910923
NOD/ShiLtJ f 1797.1063829787 107.8704451568 2008.8336428656 1585.3791230918
NOD/ShiLtJ m 1601.7272727273 111.4872137085 1820.5534974324 1382.9010480221
NZO/HlLtJ f 235.4042553191 107.8704451568 447.1315152061 23.6769954322
NZO/HlLtJ m 219.152173913 109.0366460237 433.1684436737 5.1359041524
PWK/PhJ f 1440.3404255319 107.8704451568 1652.0676854188 1228.613165645
PWK/PhJ m 917.7291666667 106.7408805727 1127.2393260874 708.219007246
WSB/EiJ f 1332.6545454545 99.7171953897 1528.3786709347 1136.9304199744
WSB/EiJ m 1421.9607843137 103.5538647465 1625.21549418 1218.7060744475


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 182.6836734694 74.7030548853 329.3102410436 36.0571058951
A/J both 171.4956284153 67.231615461 303.457313552 39.5339432786
C57BL/6J both 814.3918079096 67.7943114124 947.4579482265 681.3256675927
C57BL/6NJ both 762.2692307692 145.0322972122 1046.9374810877 477.6009804508
CAST/EiJ both 1657.3681818182 93.2768951795 1840.4513367863 1474.28502685
DBA/2J both 688.1875 106.7408805727 897.6976594207 478.6773405793
NOD/ShiLtJ both 1699.416827853 77.5651851006 1851.6611620644 1547.1724936416
NZO/HlLtJ both 227.2782146161 76.6893459263 377.8034585965 76.7529706357
PWK/PhJ both 1179.0347960993 75.8776128442 1327.9667767815 1030.1028154171
WSB/EiJ both 1377.3076648841 71.8799728024 1518.3931091881 1236.2222205802




  GWAS USING LINEAR MIXED MODELS