Project measure / variable:   CSNA03   pct_time_light_LD_in

ID, description, units MPD:90211   pct_time_light_LD_in   percentage of time in light, 20 min test (LD box), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of time in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means37.162   % 36.674   %
Median of the strain means38.041   % 37.228   %
SD of the strain means± 9.0168 ± 11.579
Coefficient of variation (CV)0.2426 0.3157
Min–max range of strain means17.188   –   48.781   % 18.492   –   53.26   %
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 811.1841 811.1841 1.9934 0.1584
strain 9 75020.3933 8335.5993 20.484 < 0.0001
sex:strain 9 4720.6399 524.5155 1.2889 0.2387
Residuals 840 341823.391 406.9326


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 33.849 41.362   49 5.9089 1.222 0.09, 100.0 -0.37
129S1/SvImJ m 27.855 36.028   49 5.1469 1.2934 0.04333, 100.0 -0.76
A/J f 31.646 36.445   60 4.7051 1.1517 0.04167, 100.0 -0.61
A/J m 21.254 29.953   61 3.8351 1.4093 0.11667, 100.0 -1.33
C57BL/6J f 42.276 15.638   60 2.0189 0.3699 6.6133, 100.0 0.57
C57BL/6J m 41.396 8.9089   59 1.1598 0.2152 23.51, 66.65 0.41
C57BL/6NJ f 43.398 15.556   13 4.3144 0.3584 18.333, 79.71 0.69
C57BL/6NJ m 53.26 17.696   13 4.908 0.3322 27.117, 90.27 1.43
CAST/EiJ f 45.552 9.0546   33 1.5762 0.1988 15.75, 76.83 0.93
CAST/EiJ m 44.419 11.827   30 2.1593 0.2663 0.17667, 75.49 0.67
DBA/2J f 32.847 5.9303   24 1.2105 0.1805 16.887, 42.2 -0.48
DBA/2J m 35.181 10.408   24 2.1246 0.2959 18.623, 56.59 -0.13
NOD/ShiLtJ f 48.781 10.914   47 1.5919 0.2237 2.2633, 70.35 1.29
NOD/ShiLtJ m 50.52 7.341   44 1.1067 0.1453 36.717, 78.52 1.2
NZO/HlLtJ f 17.188 8.6689   47 1.2645 0.5044 1.3767, 45.41 -2.22
NZO/HlLtJ m 18.492 8.36   46 1.2326 0.4521 1.2333, 39.13 -1.57
PWK/PhJ f 38.657 9.4625   47 1.3803 0.2448 23.823, 75.06 0.17
PWK/PhJ m 35.087 7.507   48 1.0835 0.214 0.23, 50.93 -0.14
WSB/EiJ f 37.426 8.3351   55 1.1239 0.2227 24.558, 72.79 0.03
WSB/EiJ m 39.276 9.5992   51 1.3442 0.2444 16.642, 84.01 0.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 33.8489610204 2.8817958131 39.5053271378 28.192594903
129S1/SvImJ m 27.8545608163 2.8817958131 33.5109269337 22.1981946989
A/J f 31.6456621667 2.6042676779 36.757298247 26.5340260863
A/J m 21.2537055738 2.5828330116 26.3232698598 16.1841412877
C57BL/6J f 42.275905 2.6042676779 47.3875410803 37.1642689197
C57BL/6J m 41.3959661017 2.62624501 46.5507391162 36.2411930872
C57BL/6NJ f 43.3984615385 5.5948644605 54.3800174218 32.4169056551
C57BL/6NJ m 53.2621538462 5.5948644605 64.2437097295 42.2805979628
CAST/EiJ f 45.5521818182 3.5115938206 52.4447105028 38.6596531336
CAST/EiJ m 44.4194556667 3.6829906702 51.6484007374 37.190510596
DBA/2J f 32.8469583333 4.1177087495 40.9291646252 24.7647520415
DBA/2J m 35.181375 4.1177087495 43.2635812919 27.0991687081
NOD/ShiLtJ f 48.7812191489 2.9424718524 54.5566797183 43.0057585796
NOD/ShiLtJ m 50.5190681818 3.0411294564 56.488173119 44.5499632446
NZO/HlLtJ f 17.1876276596 2.9424718524 22.963088229 11.4121670902
NZO/HlLtJ m 18.4918217391 2.9742832834 24.3297215347 12.6539219436
PWK/PhJ f 38.6565319149 2.9424718524 44.4319924843 32.8810713455
PWK/PhJ m 35.0868541667 2.9116597797 40.8018370426 29.3718712908
WSB/EiJ f 37.4263818182 2.7200688771 42.7653115799 32.0874520564
WSB/EiJ m 39.2763921569 2.8247248983 44.8207399324 33.7320443813


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 30.8517609184 2.0377373614 34.8514157569 26.8521060799
A/J both 26.4496838702 1.833932694 30.0493125131 22.8500552273
C57BL/6J both 41.8359355508 1.8492818194 45.4656913363 38.2061797654
C57BL/6NJ both 48.3303076923 3.9561665998 56.0954403254 40.5651750592
CAST/EiJ both 44.9858187424 2.5443914517 49.9799302376 39.9917072473
DBA/2J both 34.0141666667 2.9116597797 39.7291495426 28.2991837908
NOD/ShiLtJ both 49.6501436654 2.1158100678 53.8030389969 45.4972483338
NZO/HlLtJ both 17.8397246994 2.0919190742 21.9457269769 13.7337224219
PWK/PhJ both 36.8716930408 2.0697767558 40.9342345501 32.8091515314
WSB/EiJ both 38.3513869875 1.9607298034 42.1998919978 34.5028819772




  GWAS USING LINEAR MIXED MODELS