Project measure / variable:   CSNA03   time_dark_LD_in

ID, description, units MPD:90208   time_dark_LD_in   time in dark, 20 min test (LD box), founders   [s]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure light-dark box
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  STRAIN COMPARISON PLOT
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CSNA03 - time in dark, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means760.2   s 764.1   s
Median of the strain means759.2   s 763.7   s
SD of the strain means± 118.2 ± 145.2
Coefficient of variation (CV)0.1555 0.1901
Min–max range of strain means608.7   –   1030.0   s 560.9   –   1017.0   s
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 94266.779 94266.779 1.4699 0.2257
strain 9 12388579.6063 1376508.8451 21.4638 < 0.0001
sex:strain 9 600438.811 66715.4234 1.0403 0.4057
Residuals 840 53870477.0985 64131.5204


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 808.4 518.1   49 74.01 0.6409 0.41
129S1/SvImJ m 865.8 432.2   49 61.75 0.4992 0.7
A/J f 809.6 439.6   60 56.75 0.543 0.42
A/J m 930.2 362.5   61 46.412 0.3897 1.14
C57BL/6J f 688.2 189.6   60 24.479 0.2755 -0.61
C57BL/6J m 697.6 104.1   59 13.548 0.1492 400.2, 917.9 -0.46
C57BL/6NJ f 679.2 186.7   13 51.78 0.2748 243.4, 980.0 -0.68
C57BL/6NJ m 560.9 212.3   13 58.89 0.3786 116.8, 874.6 -1.4
CAST/EiJ f 653.4 108.7   33 18.916 0.1663 278.0, 1011.0 -0.9
CAST/EiJ m 667.0 141.9   30 25.914 0.2128 294.1, 1198.0 -0.67
DBA/2J f 805.8 71.17   24 14.528 0.0883 693.6, 997.4 0.39
DBA/2J m 777.8 124.9   24 25.493 0.1606 520.9, 976.5 0.09
NOD/ShiLtJ f 608.7 130.1   47 18.973 0.2137 355.8, 1173.0 -1.28
NOD/ShiLtJ m 585.9 94.31   44 14.217 0.1609 257.7, 759.4 -1.23
NZO/HlLtJ f 1030.0 170.2   47 24.821 0.1651 655.1, 1639.0 2.28
NZO/HlLtJ m 1017.0 187.6   46 27.655 0.1844 730.4, 1770.0 1.74
PWK/PhJ f 754.0 139.7   47 20.38 0.1853 299.3, 1267.0 -0.05
PWK/PhJ m 788.8 113.8   48 16.428 0.1443 588.8, 1261.0 0.17
WSB/EiJ f 764.5 134.7   55 18.167 0.1762 326.5, 1251.0 0.04
WSB/EiJ m 749.6 143.3   51 20.069 0.1912 191.9, 1168.0 -0.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 808.3632653061 36.1774313332 879.3720424998 737.3544881125
129S1/SvImJ m 865.7587755102 36.1774313332 936.7675527038 794.7499983166
A/J f 809.5836666667 32.6934041144 873.7540226846 745.4133106487
A/J m 930.157704918 32.4243180232 993.7999008761 866.51550896
C57BL/6J f 688.1683333333 32.6934041144 752.3386893513 623.9979773154
C57BL/6J m 697.5796610169 32.9693027114 762.2915486274 632.8677734065
C57BL/6NJ f 679.2076923077 70.236698908 817.0677315583 541.3476530571
C57BL/6NJ m 560.8538461538 70.236698908 698.7138854044 422.9938069032
CAST/EiJ f 653.3606060606 44.0837771148 739.8878964637 566.8333156576
CAST/EiJ m 666.9733333333 46.2354554988 757.7239211162 576.2227455504
DBA/2J f 805.8375 51.692810733 907.2997416403 704.3752583597
DBA/2J m 777.8166666667 51.692810733 879.278908307 676.3544250264
NOD/ShiLtJ f 608.7340425532 36.9391449968 681.2379053246 536.2301797818
NOD/ShiLtJ m 585.95 38.1776708762 660.8848316097 511.0151683903
NZO/HlLtJ f 1030.3744680851 36.9391449968 1102.8783308565 957.8706053137
NZO/HlLtJ m 1017.352173913 37.3384987109 1090.6398850082 944.0644628179
PWK/PhJ f 754.0106382979 36.9391449968 826.5145010693 681.5067755265
PWK/PhJ m 788.8020833333 36.5523370079 860.5467224316 717.0574442351
WSB/EiJ f 764.5272727273 34.1471469207 831.551023672 697.5035217826
WSB/EiJ m 749.6 35.460975611 819.2025235468 679.9974764532


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 837.0610204082 25.5813070216 887.2718082856 786.8502325308
A/J both 869.8706857924 23.0227880146 915.0596327203 824.6817388644
C57BL/6J both 692.8739971751 23.2154775628 738.4411536301 647.3068407201
C57BL/6NJ both 620.0307692308 49.664846086 717.5125378395 522.549000622
CAST/EiJ both 660.166969697 31.9417311283 722.8619478998 597.4719914941
DBA/2J both 791.8270833333 36.5523370079 863.5717224316 720.0824442351
NOD/ShiLtJ both 597.3420212766 26.5614146208 649.4765566278 545.2074859254
NZO/HlLtJ both 1023.8633209991 26.2614923371 1075.4091712548 972.3174707433
PWK/PhJ both 771.4063608156 25.9835225375 822.4066141388 720.4061074924
WSB/EiJ both 757.0636363636 24.6145710612 805.3769225145 708.7503502128




  GWAS USING LINEAR MIXED MODELS