Project measure / variable:   CSNA03   amb_time_dark_LD_do

ID, description, units MPD:90150   amb_time_dark_LD_do   ambulatory time in dark, 20 min test (LD box), DO   [s]  
Data set, strains CSNA03   DO population w/par   9 strains     sex: both     age: 4-25wks
Procedure light-dark box
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Plot Options Bins number: (min: 10, max: 40)


Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means59.25   s 52.64   s
Median of the strain means62.52   s 54.46   s
SD of the strain means± 26.198 ± 21.425
Coefficient of variation (CV)0.4421 0.407
Min–max range of strain means14.76   –   90.25   s 17.784   –   77.12   s
Mean sample size per strain210.4   mice 199.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 59845.9245 59845.9245 123.243 < 0.0001
strain 8 464307.6912 58038.4614 119.5208 < 0.0001
sex:strain 8 9680.9452 1210.1181 2.492 0.0107
Residuals 3667 1780668.8558 485.5928


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 14.76 20.874   49 2.982 1.4142 -1.7
129S1/SvImJ m 17.784 17.161   49 2.4515 0.965 -1.63
A/J f 23.058 22.233   60 2.8703 0.9642 -1.38
A/J m 22.395 16.945   61 2.1696 0.7567 -1.41
C57BL/6J f 51.96 15.867   60 2.0484 0.3054 -0.28
C57BL/6J m 54.46 14.809   59 1.9279 0.2719 27.24, 110.0 0.08
CAST/EiJ f 80.51 16.33   33 2.8426 0.2028 52.92, 112.4 0.81
CAST/EiJ m 69.2 18.322   30 3.3451 0.2648 6.04, 110.3 0.77
J:DO f 62.52 25.046   1496 0.64755 0.4006 0.2, 483.8 0.12
J:DO m 54.05 19.917   1403 0.53174 0.3685 0.07
NOD/ShiLtJ f 82.07 34.303   47 5.0037 0.418 35.12, 285.8 0.87
NOD/ShiLtJ m 74.6 17.33   44 2.6127 0.2323 25.32, 112.9 1.03
NZO/HlLtJ f 55.21 18.838   47 2.7479 0.3412 26.04, 104.1 -0.15
NZO/HlLtJ m 42.569 10.532   46 1.5528 0.2474 24.08, 66.8 -0.47
PWK/PhJ f 72.95 20.169   47 2.942 0.2765 46.16, 153.9 0.52
PWK/PhJ m 61.58 17.467   48 2.5211 0.2836 0.6, 121.9 0.42
WSB/EiJ f 90.25 18.475   55 2.4912 0.2047 47.12, 130.9 1.18
WSB/EiJ m 77.12 19.775   51 2.769 0.2564 43.16, 120.8 1.14


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 14.7602040816 3.1480243752 20.9322556737 8.5881524895
129S1/SvImJ m 17.783877551 3.1480243752 23.9559291431 11.6118259589
A/J f 23.0576666667 2.844857395 28.6353257066 17.4800076268
A/J m 22.3947540984 2.8214425327 27.9265056988 16.8630024979
C57BL/6J f 51.9586666667 2.844857395 57.5363257066 46.3810076268
C57BL/6J m 54.4647457627 2.868865056 60.0894744898 48.8400170357
CAST/EiJ f 80.5127272727 3.8360049289 88.0336411879 72.9918133576
CAST/EiJ m 69.202 4.0232359111 77.0900010605 61.3139989395
J:DO f 62.5169050802 0.5697316283 63.6339272453 61.3998829151
J:DO m 54.0494725588 0.5883114365 55.2029225025 52.8960226151
NOD/ShiLtJ f 82.0680851064 3.2143058411 88.3700888774 75.7660813353
NOD/ShiLtJ m 74.6 3.3220777175 81.1133025102 68.0866974898
NZO/HlLtJ f 55.2117021277 3.2143058411 61.5137058987 48.9096983566
NZO/HlLtJ m 42.5691304348 3.2490561033 48.9392659564 36.1989949132
PWK/PhJ f 72.9514893617 3.2143058411 79.2534931328 66.6494855906
PWK/PhJ m 61.58375 3.1806472608 67.8197623843 55.3477376157
WSB/EiJ f 90.2461818182 2.9713566411 96.0718566865 84.4205069499
WSB/EiJ m 77.1176470588 3.0856810856 83.1674677042 71.0678264134


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 16.2720408163 2.2259893831 20.6363403509 11.9077412817
A/J both 22.7262103825 2.0033566559 26.6540137169 18.7984070481
C57BL/6J both 53.2117062147 2.0201237776 57.1723833543 49.251029075
CAST/EiJ both 74.8573636364 2.7794496312 80.3067834874 69.4079437854
J:DO both 58.2831888195 0.4094827452 59.0860252427 57.4803523963
NOD/ShiLtJ both 78.3340425532 2.31127467 82.8655533697 73.8025317367
NZO/HlLtJ both 48.8904162812 2.2851765579 53.3707588489 44.4100737136
PWK/PhJ both 67.2676196809 2.2609886686 71.7005392038 62.8347001579
WSB/EiJ both 83.6819144385 2.1418676459 87.88128396 79.482544917




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA