Project measure / variable:   CSNA03   dist_dark_LD_in

ID, description, units MPD:90136   dist_dark_LD_in   distance traveled in dark, 20 min test (LD box), founders   [cm]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure light-dark box
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in dark, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means3399.0   cm 3109.0   cm
Median of the strain means3284.0   cm 3295.0   cm
SD of the strain means± 1309.0 ± 1115.0
Coefficient of variation (CV)0.3852 0.3587
Min–max range of strain means1081.0   –   4965.0   cm 1284.0   –   4507.0   cm
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 16795962.3073 16795962.3073 9.8474 0.0018
strain 9 1264778539.5737 140530948.8415 82.393 < 0.0001
sex:strain 9 24710998.5415 2745666.5046 1.6098 0.108
Residuals 840 1432719582.6933 1705618.5508


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1081.0 1509.0   49 215.5 1.3956 -1.77
129S1/SvImJ m 1284.0 1303.0   49 186.1 1.0147 -1.64
A/J f 1633.0 1421.0   60 183.5 0.8705 -1.35
A/J m 1602.0 986.4   61 126.3 0.6156 -1.35
C57BL/6J f 3221.0 938.5   60 121.2 0.2914 -0.14
C57BL/6J m 3442.0 1082.0   59 140.9 0.3144 2020.0, 9878.0 0.3
C57BL/6NJ f 2830.0 746.2   13 207.0 0.2637 989.3, 3991.0 -0.43
C57BL/6NJ m 2277.0 809.1   13 224.4 0.3553 505.5, 3349.0 -0.75
CAST/EiJ f 4642.0 966.8   33 168.3 0.2083 2706.0, 8037.0 0.95
CAST/EiJ m 4227.0 1430.0   30 261.1 0.3384 595.6, 8935.0 1.0
DBA/2J f 3301.0 614.4   24 125.4 0.1861 2248.0, 4629.0 -0.07
DBA/2J m 3148.0 424.5   24 86.64 0.1348 2324.0, 3908.0 0.04
NOD/ShiLtJ f 4405.0 1797.0   47 262.1 0.4079 1869.0, 13762.0 0.77
NOD/ShiLtJ m 4033.0 1026.0   44 154.7 0.2544 1525.0, 8272.0 0.83
NZO/HlLtJ f 3268.0 1068.0   47 155.7 0.3267 1682.0, 6348.0 -0.1
NZO/HlLtJ m 2706.0 543.8   46 80.18 0.201 1814.0, 4580.0 -0.36
PWK/PhJ f 4642.0 2492.0   47 363.6 0.5369 2776.0, 17258.0 0.95
PWK/PhJ m 3860.0 1431.0   48 206.5 0.3706 109.6, 10126.0 0.67
WSB/EiJ f 4965.0 1058.0   55 142.7 0.2131 2702.0, 7424.0 1.2
WSB/EiJ m 4507.0 1587.0   51 222.2 0.3521 2692.0, 11843.0 1.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1081.1620612245 186.5704742278 1447.3611181269 714.9630043221
129S1/SvImJ m 1284.1922469388 186.5704742278 1650.3913038412 917.9931900364
A/J f 1632.8529333333 168.6030125682 1963.7855980487 1301.920268618
A/J m 1602.2870491803 167.2153098541 1930.4959419414 1274.0781564192
C57BL/6J f 3220.8166666667 168.6030125683 3551.749331382 2889.8840019513
C57BL/6J m 3442.4576271186 170.0258480262 3776.183022061 3108.7322321763
C57BL/6NJ f 2829.6384615384 362.2173753239 3540.5958720629 2118.681051014
C57BL/6NJ m 2277.0384615384 362.2173753239 2987.9958720629 1566.081051014
CAST/EiJ f 4642.0303030303 227.3442557688 5088.2598171016 4195.800788959
CAST/EiJ m 4226.52 238.440667031 4694.5294626727 3758.5105373273
DBA/2J f 3300.7916666667 266.5847700408 3824.0421529913 2777.541180342
DBA/2J m 3148.4583333333 266.5847700408 3671.708819658 2625.2078470087
NOD/ShiLtJ f 4405.1063829787 190.498704459 4779.01573923 4031.1970267275
NOD/ShiLtJ m 4032.9772727273 196.8859009003 4419.4233678314 3646.5311776231
NZO/HlLtJ f 3267.6170212766 190.498704459 3641.5263775279 2893.7076650253
NZO/HlLtJ m 2705.5 192.5582097662 3083.4517370424 2327.5482629576
PWK/PhJ f 4642.4042553191 190.498704459 5016.3136115704 4268.4948990679
PWK/PhJ m 3860.4083333333 188.5038986569 4230.4023004726 3490.414366194
WSB/EiJ f 4964.5272727273 176.1001032897 5310.1751680442 4618.8793774104
WSB/EiJ m 4506.568627451 182.8756435302 4865.5154997702 4147.6217551318


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1182.6771540817 131.9252474957 1441.6189904815 923.7353176818
A/J both 1617.5699912568 118.7307202209 1850.613713476 1384.5262690377
C57BL/6J both 3331.6371468926 119.7244386541 3566.6313318234 3096.6429619619
C57BL/6NJ both 2553.3384615384 256.1263623552 3056.0612676551 2050.6156554218
CAST/EiJ both 4434.2751515151 164.7265630714 4757.599151699 4110.9511513313
DBA/2J both 3224.625 188.5038986569 3594.6189671393 2854.6310328607
NOD/ShiLtJ both 4219.041827853 136.9797561447 4487.9046140068 3950.1790416992
NZO/HlLtJ both 2986.5585106383 135.4330282362 3252.3853914393 2720.7316298373
PWK/PhJ both 4251.4062943262 133.9995113885 4514.4194795526 3988.3931090999
WSB/EiJ both 4735.5479500891 126.9396976671 4984.7041885645 4486.3917116138




  GWAS USING LINEAR MIXED MODELS