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Project measure / variable:   CSNA03   dist_LD_in

ID, description, units MPD:90130   dist_LD_in   total distance traveled, 20 min test (LD box), founders   [cm]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
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  STRAIN COMPARISON PLOT
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CSNA03 - total distance traveled, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means5824.0   cm 5359.0   cm
Median of the strain means5365.0   cm 5390.0   cm
SD of the strain means± 2710.0 ± 2386.0
Coefficient of variation (CV)0.4654 0.4452
Min–max range of strain means1548.0   –   9102.0   cm 1911.0   –   8259.0   cm
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 54508263.9473 54508263.9473 6.8481 0.009
strain 9 5490632681.516 610070297.9462 76.6462 < 0.0001
sex:strain 9 93854720.5867 10428302.2874 1.3102 0.2273
Residuals 840 6686031350.9461 7959561.1321


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1548.0 2310.0   49 330.0 1.4927 15.24, 12142.0 -1.58
129S1/SvImJ m 1911.0 2054.0   49 293.4 1.0744 56.53, 10907.0 -1.45
A/J f 2378.0 2277.0   60 293.9 0.9576 214.0, 13073.0 -1.27
A/J m 2059.0 1448.0   61 185.3 0.7029 357.9, 6634.0 -1.38
C57BL/6J f 5520.0 1149.0   60 148.3 0.2081 1899.0, 9693.0 -0.11
C57BL/6J m 5771.0 2005.0   59 261.0 0.3474 3730.0, 19057.0 0.17
C57BL/6NJ f 5063.0 896.8   13 248.7 0.1771 3740.0, 6964.0 -0.28
C57BL/6NJ m 4609.0 777.6   13 215.7 0.1687 2549.0, 5590.0 -0.31
CAST/EiJ f 9102.0 4629.0   33 805.9 0.5086 3565.0, 32940.0 1.21
CAST/EiJ m 8259.0 4440.0   30 810.7 0.5376 609.3, 26751.0 1.22
DBA/2J f 5210.0 1142.0   24 233.1 0.2191 3352.0, 7931.0 -0.23
DBA/2J m 5009.0 915.8   24 186.9 0.1828 3298.0, 6440.0 -0.15
NOD/ShiLtJ f 8709.0 3960.0   47 577.6 0.4546 4042.0, 25602.0 1.06
NOD/ShiLtJ m 8083.0 1504.0   44 226.8 0.1861 6191.0, 14301.0 1.14
NZO/HlLtJ f 4037.0 1347.0   47 196.5 0.3337 1790.0, 7460.0 -0.66
NZO/HlLtJ m 3491.0 801.8   46 118.2 0.2297 2141.0, 5844.0 -0.78
PWK/PhJ f 8343.0 5861.0   47 855.0 0.7025 4789.0, 31175.0 0.93
PWK/PhJ m 6335.0 2263.0   48 326.6 0.3572 125.0, 14502.0 0.41
WSB/EiJ f 8335.0 2548.0   55 343.6 0.3058 5170.0, 21300.0 0.93
WSB/EiJ m 8064.0 4601.0   51 644.2 0.5705 4705.0, 32778.0 1.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1547.6476938776 403.0384883651 2338.7284634665 756.5669242886
129S1/SvImJ m 1911.4651020408 403.0384883651 2702.5458716298 1120.3843324519
A/J f 2377.5766666667 364.2243157744 3092.4732840954 1662.680049238
A/J m 2059.4262295082 361.226533802 2768.4388240998 1350.4136349166
C57BL/6J f 5520.2333333333 364.2243157744 6235.129950762 4805.3367159046
C57BL/6J m 5770.779661017 367.2979931853 6491.7092682516 5049.8500537823
C57BL/6NJ f 5063.1538461538 782.4793500386 6598.9981495774 3527.3095427303
C57BL/6NJ m 4608.8461538462 782.4793500386 6144.6904572697 3073.0018504227
CAST/EiJ f 9101.5151515151 491.1199672017 10065.4815538069 8137.5487492234
CAST/EiJ m 8259.41 515.0909671142 9270.4264920623 7248.3935079376
DBA/2J f 5210.2916666666 575.8892085317 6340.642467979 4079.9408653543
DBA/2J m 5009.2916666667 575.8892085317 6139.642467979 3878.9408653543
NOD/ShiLtJ f 8709.4468085107 411.5244397509 9517.1837366224 7901.709880399
NOD/ShiLtJ m 8083.0454545455 425.3223679025 8917.8648473248 7248.2260617661
NZO/HlLtJ f 4036.7234042553 411.5244397509 4844.460332367 3228.9864761436
NZO/HlLtJ m 3490.5869565217 415.9734819119 4307.0564295348 2674.1174835087
PWK/PhJ f 8342.9574468085 411.5244397509 9150.6943749202 7535.2205186968
PWK/PhJ m 6335.3333333333 407.2151645649 7134.6120500609 5536.0546166057
WSB/EiJ f 8334.5636363636 380.4198907924 9081.2488008395 7587.8784718878
WSB/EiJ m 8063.7254901961 395.0567378481 8839.1397427552 7288.311237637


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1729.5563979592 284.9912482022 2288.9349746018 1170.1778213166
A/J both 2218.5014480874 256.4877974309 2721.9336761233 1715.0692200516
C57BL/6J both 5645.5064971751 258.6344756598 6153.1522083258 5137.8607860245
C57BL/6NJ both 4836.0 553.2964545507 5922.0059217975 3749.9940782025
CAST/EiJ both 8680.4625757575 355.8502236148 9378.9225910715 7982.0025604436
DBA/2J both 5109.7916666667 407.2151645649 5909.0703833943 4310.512949939
NOD/ShiLtJ both 8396.2461315281 295.9102402547 8977.0564197453 7815.4358433109
NZO/HlLtJ both 3763.6551803885 292.568924429 4337.9071602278 3189.4032005492
PWK/PhJ both 7339.1453900709 289.4721725676 7907.3190897546 6770.9716903872
WSB/EiJ both 8199.1445632799 274.2212243015 8737.3838218629 7660.9053046968




  GWAS USING LINEAR MIXED MODELS