Project measure / variable:   CSNA03   center_dist_OFT_in

ID, description, units MPD:90127   center_dist_OFT_in   distance traveled in center, 60 min test (OFT), founders   [cm]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in center, 60 min test (OFT), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means5146.0   cm 4901.0   cm
Median of the strain means4652.0   cm 5867.0   cm
SD of the strain means± 4167.0 ± 3367.0
Coefficient of variation (CV)0.8097 0.687
Min–max range of strain means492.1   –   12720.0   cm 468.8   –   11380.0   cm
Mean sample size per strain43.5   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 47441072.5436 47441072.5436 2.9138 0.0882
strain 9 11421124901.8829 1269013877.987 77.9412 < 0.0001
sex:strain 9 378306352.6031 42034039.1781 2.5817 0.0062
Residuals 841 13692894762.5115 16281682.2384


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 492.1 1430.0   48 206.3 2.9048 6.4758, 9474.0 -1.12
129S1/SvImJ m 728.2 1577.0   49 225.2 2.1652 7.7251, 8353.0 -1.24
A/J f 1113.0 2444.0   59 318.1 2.1949 6.35, 12326.0 -0.97
A/J m 1375.0 3646.0   61 466.8 2.6504 13.189, 25297.0 -1.05
C57BL/6J f 6019.0 1465.0   61 187.6 0.2434 3561.0, 9323.0 0.21
C57BL/6J m 6001.0 1862.0   59 242.4 0.3103 3075.0, 15361.0 0.33
C57BL/6NJ f 3222.0 1538.0   13 426.4 0.4772 1086.0, 5873.0 -0.46
C57BL/6NJ m 5983.0 4832.0   13 1340.0 0.8077 2100.0, 17221.0 0.32
CAST/EiJ f 10405.0 12318.0   33 2144.0 1.1839 999.9, 64143.0 1.26
CAST/EiJ m 6170.0 3080.0   30 562.4 0.4992 3028.0, 20432.0 0.38
DBA/2J f 3286.0 1444.0   24 294.7 0.4393 -0.45
DBA/2J m 4004.0 1718.0   25 343.6 0.4291 568.6, 7993.0 -0.27
NOD/ShiLtJ f 12720.0 6516.0   47 950.4 0.5123 6928.0, 46041.0 1.82
NOD/ShiLtJ m 11380.0 4665.0   44 703.3 0.41 5411.0, 29779.0 1.92
NZO/HlLtJ f 663.8 793.6   47 115.8 1.1954 16.064, 4361.0 -1.08
NZO/HlLtJ m 468.8 206.0   46 30.369 0.4393 120.8, 1004.0 -1.32
PWK/PhJ f 6675.0 2163.0   48 312.2 0.3241 3316.0, 15924.0 0.37
PWK/PhJ m 5751.0 2484.0   47 362.3 0.4319 15.345, 15060.0 0.25
WSB/EiJ f 6863.0 4077.0   55 549.7 0.594 2856.0, 31439.0 0.41
WSB/EiJ m 7149.0 6455.0   52 895.1 0.9029 3491.0, 41273.0 0.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 492.1409333334 582.410262015 1635.2892457288 -651.007379062
129S1/SvImJ m 728.2202469388 576.4366655197 1859.6436513133 -403.2031574357
A/J f 1113.2628135593 525.319632134 2144.3542796754 82.1713474432
A/J m 1375.4582295082 516.6360649245 2389.5056875624 361.410771454
C57BL/6J f 6018.524590164 516.6360649245 7032.5720482181 5004.4771321098
C57BL/6J m 6000.9322033899 525.319632134 7032.023669506 4969.8407372737
C57BL/6NJ f 3222.2307692308 1119.1233601633 5418.8335147021 1025.6280237595
C57BL/6NJ m 5982.6923076924 1119.1233601633 8179.2950531636 3786.0895622211
CAST/EiJ f 10404.6030303028 702.4132047842 11783.2917691912 9025.9142914143
CAST/EiJ m 6170.0999999997 736.6971842492 7616.0809482186 4724.1190517809
DBA/2J f 3286.3333333333 823.6524914069 4902.9891805267 1669.6774861399
DBA/2J m 4003.584 807.0113317276 5587.5767661243 2419.5912338757
NOD/ShiLtJ f 12719.8085106384 588.5735052058 13875.0539674557 11564.5630538212
NOD/ShiLtJ m 11379.5454545456 608.3076792967 12573.5249263346 10185.5659827566
NZO/HlLtJ f 663.8375319149 588.5735052058 1819.0829887321 -491.4079249024
NZO/HlLtJ m 468.8086956522 594.9366469454 1636.543655515 -698.9262642107
PWK/PhJ f 6674.8541666667 582.410262015 7818.002479062 5531.7058542713
PWK/PhJ m 5751.220106383 588.5735052058 6906.4655632002 4595.9746495657
WSB/EiJ f 6862.8181818182 544.0869288571 7930.745886882 5794.8904767544
WSB/EiJ m 7148.9230769231 559.5616800816 8247.2244496587 6050.6217041875


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 610.1805901361 409.7197037781 1414.3738169322 -194.01263666
A/J both 1244.3605215338 368.399762312 1967.4514319115 521.269611156
C57BL/6J both 6009.7283967769 368.399762312 6732.8193071547 5286.6374863992
C57BL/6NJ both 4602.4615384616 791.3397169557 6155.6942353573 3049.2288415659
CAST/EiJ both 8287.3515151512 508.9467191013 9286.3064116993 7288.3966186031
DBA/2J both 3644.9586666666 576.5567439848 4776.617759702 2513.2995736312
NOD/ShiLtJ both 12049.676982592 423.2189160829 12880.3663114855 11218.9876536985
NZO/HlLtJ both 566.3231137835 418.4400748342 1387.6325868177 -254.9863592507
PWK/PhJ both 6213.0371365248 414.0110156538 7025.6533020097 5400.4209710399
WSB/EiJ both 7005.8706293706 390.2370625558 7771.8235470809 6239.9177116603




  GWAS USING LINEAR MIXED MODELS