Project measure / variable:   CSNA03   pct_time_perimeter_OFT_do

ID, description, units MPD:90123   pct_time_perimeter_OFT_do   percentage of total time spent in perimeter, 60 min test (OFT), DO   [%]  
Data set, strains CSNA03   DO population w/par   9 strains     sex: both     age: 4-25wks
Procedure open field test
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Plot Options Bins number: (min: 10, max: 40)


Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means49.985   % 49.837   %
Median of the strain means55.58   % 52.93   %
SD of the strain means± 16.011 ± 15.277
Coefficient of variation (CV)0.3203 0.3065
Min–max range of strain means10.905   –   63.45   % 14.169   –   61.72   %
Mean sample size per strain208.0   mice 196.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2298.9543 2298.9543 7.4358 0.0064
strain 8 260747.4024 32593.4253 105.4206 < 0.0001
sex:strain 8 4405.8939 550.7367 1.7813 0.0759
Residuals 3625 1120759.3436 309.175


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.905 25.25   48 3.6445 2.3155 -2.44
129S1/SvImJ m 14.169 30.179   49 4.3112 2.13 -2.33
A/J f 55.58 41.442   59 5.3953 0.7457 0.35
A/J m 47.191 42.583   61 5.4522 0.9024 -0.17
C57BL/6J f 53.46 5.9805   61 0.76572 0.1119 39.987, 69.19 0.22
C57BL/6J m 52.93 7.3376   59 0.95527 0.1386 28.368, 70.08 0.2
CAST/EiJ f 56.64 10.207   33 1.7768 0.1802 17.015, 75.44 0.42
CAST/EiJ m 60.31 6.2132   30 1.1344 0.103 41.78, 70.47 0.69
J:DO f 59.23 15.144   1474 0.39445 0.2557 0.58
J:DO m 61.68 14.967   1383 0.40246 0.2427 0.78
NOD/ShiLtJ f 42.807 6.1642   47 0.89915 0.144 28.608, 59.96 -0.45
NOD/ShiLtJ m 44.086 7.242   44 1.0918 0.1643 31.477, 61.71 -0.38
NZO/HlLtJ f 47.304 41.779   47 6.0942 0.8832 -0.17
NZO/HlLtJ m 45.131 43.802   46 6.4583 0.9706 -0.31
PWK/PhJ f 60.49 5.74   48 0.8285 0.0949 42.388, 72.36 0.66
PWK/PhJ m 61.32 10.803   47 1.5758 0.1762 0.75
WSB/EiJ f 63.45 5.6834   55 0.76635 0.0896 38.978, 74.19 0.84
WSB/EiJ m 61.72 6.6195   52 0.91796 0.1072 35.521, 73.73 0.78


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10.9045625 2.5379412233 15.8804973165 5.9286276835
129S1/SvImJ m 14.1685714286 2.5119103688 19.093469667 9.2436731901
A/J f 55.5761016949 2.2891601278 60.0642716634 51.0879317264
A/J m 47.1906557377 2.2513201641 51.6046359688 42.7766755066
C57BL/6J f 53.4628360656 2.2513201641 57.8768162966 49.0488558345
C57BL/6J m 52.9272542373 2.2891601278 57.4154242058 48.4390842688
CAST/EiJ f 56.6375454545 3.0608722828 62.6387486427 50.6363422664
CAST/EiJ m 60.313 3.2102699333 66.6071150034 54.0188849966
J:DO f 59.2277903663 0.4579873018 60.1257287976 58.3298519351
J:DO m 61.6773449024 0.4728148286 62.6043544587 60.7503353461
NOD/ShiLtJ f 42.8069787234 2.5647984921 47.8355704012 37.7783870456
NOD/ShiLtJ m 44.0855227273 2.6507931547 49.2827171415 38.888328313
NZO/HlLtJ f 47.3044680851 2.5647984921 52.3330597629 42.2758764073
NZO/HlLtJ m 45.1306521739 2.5925268492 50.2136085849 40.0476957629
PWK/PhJ f 60.4897291667 2.5379412233 65.4656639831 55.5137943502
PWK/PhJ m 61.3175744681 2.5647984921 66.3461661458 56.2889827903
WSB/EiJ f 63.4476 2.3709414752 68.096112001 58.799087999
WSB/EiJ m 61.7232115385 2.4383750553 66.5039350722 56.9424880048


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 12.5365669643 1.7854158727 16.037086567 9.0360473615
A/J both 51.3833787163 1.6053579485 54.5308734004 48.2358840322
C57BL/6J both 53.1950451514 1.6053579485 56.3425398356 50.0475504673
CAST/EiJ both 58.4752727273 2.2178126711 62.8235575438 54.1269879107
J:DO both 60.4525676344 0.3291300012 61.0978660428 59.8072692259
NOD/ShiLtJ both 43.4462507253 1.8442407417 47.0621034616 39.8303979891
NZO/HlLtJ both 46.2175601295 1.8234162148 49.7925839105 42.6425363486
PWK/PhJ both 60.9036518174 1.8041159163 64.4408350738 57.3664685609
WSB/EiJ both 62.5854057692 1.7005173029 65.9194716552 59.2513398832




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA