Project measure / variable:   CSNA03   time_corner_OFT_in

ID, description, units MPD:90106   time_corner_OFT_in   time in corners, 60 min test (OFT), founders   [s]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - time in corners, 60 min test (OFT), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means16.265   s 12.495   s
Median of the strain means12.02   s 9.2712   s
SD of the strain means± 10.504 ± 8.6897
Coefficient of variation (CV)0.6458 0.6955
Min–max range of strain means5.282   –   31.549   s 1.709   –   25.382   s
Mean sample size per strain43.4   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3905.5194 3905.5194 32.7996 < 0.0001
strain 9 77444.3686 8604.9298 72.2664 < 0.0001
sex:strain 9 975.4137 108.3793 0.9102 0.5155
Residuals 840 100020.711 119.0723


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.7385 30.143   48 4.3507 5.2527 -1.0
129S1/SvImJ m 1.709 2.1025   49 0.30035 1.2303 0.04, 8.1 -1.24
A/J f 5.282 5.4388   59 0.70807 1.0297 -1.05
A/J m 3.8454 3.6461   61 0.46683 0.9482 0.05, 15.16 -1.0
C57BL/6J f 13.091 4.838   61 0.61944 0.3696 5.88, 28.16 -0.3
C57BL/6J m 9.912 2.7861   59 0.36272 0.2811 4.44, 17.2 -0.3
C57BL/6NJ f 9.0585 4.7609   13 1.3204 0.5256 5.4, 22.08 -0.69
C57BL/6NJ m 7.5323 5.0212   13 1.3926 0.6666 1.96, 22.44 -0.57
CAST/EiJ f 24.825 10.225   33 1.78 0.4119 1.52, 44.52 0.81
CAST/EiJ m 20.175 8.2133   30 1.4995 0.4071 6.72, 39.12 0.88
DBA/2J f 10.95 5.6635   23 1.1809 0.5172 5.16, 27.6 -0.51
DBA/2J m 8.6304 2.9833   25 0.59665 0.3457 4.0, 15.28 -0.44
NOD/ShiLtJ f 23.482 17.304   47 2.524 0.7369 3.84, 123.8 0.69
NOD/ShiLtJ m 19.356 8.0863   44 1.2191 0.4178 5.4, 44.84 0.79
NZO/HlLtJ f 7.2249 6.4509   47 0.94096 0.8929 2.04, 32.76 -0.86
NZO/HlLtJ m 5.1411 4.8833   46 0.72001 0.9499 1.88, 26.04 -0.85
PWK/PhJ f 31.45 6.9296   48 1.0002 0.2203 13.92, 45.68 1.45
PWK/PhJ m 25.382 8.713   47 1.2709 0.3433 1.48
WSB/EiJ f 31.549 15.476   55 2.0868 0.4905 12.24, 83.32 1.46
WSB/EiJ m 23.265 12.276   52 1.7024 0.5277 1.24


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.7385416667 1.575015046 8.8299687901 2.6471145432
129S1/SvImJ m 1.7089795918 1.5588606185 4.7686989323 -1.3507397486
A/J f 5.2820338983 1.4206245641 8.0704246002 2.4936431964
A/J m 3.8454098361 1.3971415489 6.5877082608 1.1031114113
C57BL/6J f 13.091147541 1.3971415489 15.8334459657 10.3488491163
C57BL/6J m 9.9120338983 1.4206245641 12.7004246002 7.1236431964
C57BL/6NJ f 9.0584615385 3.0264510184 14.9987557533 3.1181673236
C57BL/6NJ m 7.5323076923 3.0264510184 13.4726019072 1.5920134775
CAST/EiJ f 24.8254545455 1.899539617 28.5538559401 21.0970531508
CAST/EiJ m 20.1746666667 1.9922539578 24.0850470389 16.2642862944
DBA/2J f 10.9495652174 2.2753143593 15.4155343155 6.4835961193
DBA/2J m 8.6304 2.1824048659 12.9140070766 4.3467929234
NOD/ShiLtJ f 23.4821276596 1.5916823361 26.6062692086 20.3579861105
NOD/ShiLtJ m 19.3563636364 1.6450495639 22.5852539596 16.1274733131
NZO/HlLtJ f 7.224893617 1.5916823361 10.3490351661 4.100752068
NZO/HlLtJ m 5.1410869565 1.6088902128 8.2990039904 1.9831699227
PWK/PhJ f 31.4495833333 1.575015046 34.5410104568 28.3581562099
PWK/PhJ m 25.3819148936 1.5916823361 28.5060564427 22.2577733446
WSB/EiJ f 31.5494545455 1.4713770605 34.4374618473 28.6614472436
WSB/EiJ m 23.2648076923 1.5132255092 26.2349547997 20.2946605849


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.7237606293 1.1080070874 5.8985482109 1.5489730476
A/J both 4.5637218672 0.9962653587 6.5191836641 2.6082600703
C57BL/6J both 11.5015907196 0.9962653587 13.4570525165 9.5461289227
C57BL/6NJ both 8.2953846154 2.1400240381 12.4958069369 4.0949622938
CAST/EiJ both 22.5000606061 1.3763472117 25.2015440696 19.7985771425
DBA/2J both 9.7899826087 1.5763840294 12.8840967619 6.6958684555
NOD/ShiLtJ both 21.419245648 1.1445130762 23.6656868968 19.1728043991
NZO/HlLtJ both 6.1829902868 1.1315896314 8.4040655 3.9619150735
PWK/PhJ both 28.4157491135 1.1196121041 30.6133149304 26.2181832966
WSB/EiJ both 27.4071311189 1.0553200813 29.47850506 25.3357571778




  GWAS USING LINEAR MIXED MODELS