Project measure / variable:   CSNA03   habituation_OFT_in

ID, description, units MPD:90055   habituation_OFT_in   habituation ratio (first:last intervals), 60 min test (OFT), founders   [ratio]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - habituation ratio (first:last intervals), 60 min test (OFT), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means4.6845   ratio 5.7665   ratio
Median of the strain means3.3508   ratio 3.9148   ratio
SD of the strain means± 3.6619 ± 6.429
Coefficient of variation (CV)0.7817 1.1149
Min–max range of strain means1.3029   –   13.585   ratio 1.5832   –   23.57   ratio
Mean sample size per strain36.0   mice 33.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 38.1446 38.1446 0.2952 0.5871
strain 9 5408.1594 600.9066 4.651 < 0.0001
sex:strain 9 718.6579 79.8509 0.618 0.7822
Residuals 677 87467.9847 129.1994


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 13.585 16.688   8 5.9001 1.2284 1.2395, 49.997 2.43
129S1/SvImJ m 23.57 54.44   9 18.146 2.3096 0.35649, 167.5 2.77
A/J f 4.0404 8.3269   49 1.1896 2.0609 0.23047, 54.81 -0.18
A/J m 5.7518 8.2478   46 1.2161 1.4339 0.04566, 43.469 0.0
C57BL/6J f 2.9258 1.4013   61 0.17942 0.479 0.78453, 8.1838 -0.48
C57BL/6J m 2.3504 1.3277   59 0.17285 0.5649 0.81646, 10.174 -0.53
C57BL/6NJ f 2.2383 1.1032   13 0.30598 0.4929 0.6471, 4.8256 -0.67
C57BL/6NJ m 3.2091 2.2286   13 0.61809 0.6945 1.2729, 7.986 -0.4
CAST/EiJ f 2.4939 1.4452   33 0.25157 0.5795 0.1459, 6.4197 -0.6
CAST/EiJ m 2.9276 1.7545   30 0.32032 0.5993 0.72246, 8.2974 -0.44
DBA/2J f 2.6637 2.1545   21 0.47015 0.8088 0.48376, 9.2706 -0.55
DBA/2J m 2.6849 4.0126   21 0.87563 1.4945 0.25889, 14.529 -0.48
NOD/ShiLtJ f 6.2271 26.024   47 3.796 4.1791 0.83992, 180.7 0.42
NOD/ShiLtJ m 4.6205 5.3579   43 0.81707 1.1596 1.7424, 35.905 -0.18
NZO/HlLtJ f 7.5921 9.5361   25 1.9072 1.2561 0.31856, 36.409 0.79
NZO/HlLtJ m 5.1033 6.7277   19 1.5434 1.3183 1.2577, 28.704 -0.1
PWK/PhJ f 1.3029 0.52959   48 0.07644 0.4065 0.18369, 2.8859 -0.92
PWK/PhJ m 1.5832 0.95962   45 0.14305 0.6061 0.67144, 5.5559 -0.65
WSB/EiJ f 3.7757 7.1891   55 0.96937 1.904 0.58701, 54.22 -0.25
WSB/EiJ m 5.8639 17.908   52 2.4834 3.0539 0.78929, 129.5 0.02


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 13.585225 4.0186967192 21.4758325043 5.6946174957
129S1/SvImJ m 23.5703322222 3.7888636022 31.0096683208 16.1309961236
A/J f 4.0403606122 1.6237986867 7.2286475116 0.8520737128
A/J m 5.751821087 1.6759123834 9.0424318876 2.4612102863
C57BL/6J f 2.9257595082 1.4553428224 5.7832876567 0.0682313597
C57BL/6J m 2.3503654237 1.4798040787 5.255922619 -0.5551917716
C57BL/6NJ f 2.2382538462 3.1525250754 8.4281556367 -3.9516479444
C57BL/6NJ m 3.2090538462 3.1525250754 9.3989556367 -2.9808479444
CAST/EiJ f 2.493860303 1.9786694838 6.3789268728 -1.3912062667
CAST/EiJ m 2.9275896667 2.0752460623 7.0022818607 -1.1471025274
DBA/2J f 2.6637480952 2.480393465 7.5339367798 -2.2064405893
DBA/2J m 2.6848919048 2.480393465 7.5550805893 -2.1852967798
NOD/ShiLtJ f 6.2270897872 1.6579876714 9.4825058776 2.9716736969
NOD/ShiLtJ m 4.6205372093 1.7333888476 8.0240015671 1.2170728515
NZO/HlLtJ f 7.5920544 2.2733181613 12.0556560592 3.1284527408
NZO/HlLtJ m 5.1033421053 2.6076747715 10.223444357 -0.0167601465
PWK/PhJ f 1.30291 1.6406260655 4.5242370243 -1.9184170243
PWK/PhJ m 1.5831855556 1.6944313144 4.9101578003 -1.7437866892
WSB/EiJ f 3.7756696364 1.5326707917 6.7850292611 0.7663100117
WSB/EiJ m 5.8638632692 1.5762625377 8.9588141645 2.768912374


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 18.5777786111 2.7615851751 24.0000799762 13.155477246
A/J both 4.8960908496 1.1667695243 7.1870127598 2.6051689394
C57BL/6J both 2.638062466 1.0377671755 4.6756915867 0.6004333452
C57BL/6NJ both 2.7236538462 2.2291718587 7.1005753771 -1.6532676848
CAST/EiJ both 2.7107249848 1.4336822473 5.5257231522 -0.1042731825
DBA/2J both 2.67432 1.7539030391 6.1180634445 -0.7694234445
NOD/ShiLtJ both 5.4238134983 1.1993289807 7.7786650624 3.0689619342
NZO/HlLtJ both 6.3476982526 1.7297357585 9.7439898641 2.9514066412
PWK/PhJ both 1.4430477778 1.179274286 3.7585224654 -0.8724269098
WSB/EiJ both 4.8197664528 1.0992819638 6.978178276 2.6613546296




  GWAS USING LINEAR MIXED MODELS