Project measure / variable:   CSNA03   amb_dist_OFT_in_bin11

ID, description, units MPD:90049   amb_dist_OFT_in_bin11   distance traveled in successive 5 min intervals, 60 min test (OFT), founders   [cm]  50-55 min  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in successive 5 min intervals, 60 min test (OFT), founders 50-55 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means871.6   cm 734.0   cm
Median of the strain means784.5   cm 770.2   cm
SD of the strain means± 599.5 ± 489.6
Coefficient of variation (CV)0.6878 0.667
Min–max range of strain means58.76   –   1623.0   cm 38.244   –   1396.0   cm
Mean sample size per strain43.4   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5273916.3387 5273916.3387 12.4147 0.0004
strain 9 242588101.302 26954233.478 63.4496 < 0.0001
sex:strain 9 7549432.4044 838825.8227 1.9746 0.0393
Residuals 840 356843374.55 424813.5411


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 58.76 285.9   48 41.263 4.8653 -1.36
129S1/SvImJ m 38.244 116.8   49 16.693 3.0553 -1.42
A/J f 374.7 358.8   59 46.716 0.9576 -0.83
A/J m 249.1 309.4   61 39.62 1.2425 -0.99
C57BL/6J f 883.7 275.8   61 35.315 0.3121 284.4, 1433.0 0.02
C57BL/6J m 870.2 252.9   59 32.923 0.2906 383.2, 1578.0 0.28
C57BL/6NJ f 685.2 284.7   13 78.95 0.4154 268.9, 1139.0 -0.31
C57BL/6NJ m 670.3 251.6   13 69.78 0.3753 275.7, 1161.0 -0.13
CAST/EiJ f 1529.0 1480.0   33 257.6 0.9675 223.4, 8510.0 1.1
CAST/EiJ m 1130.0 413.4   30 75.48 0.3658 514.0, 2502.0 0.81
DBA/2J f 515.3 289.9   23 60.46 0.5626 -0.59
DBA/2J m 578.5 626.9   25 125.4 1.0836 -0.32
NOD/ShiLtJ f 1620.0 1451.0   47 211.7 0.8958 280.6, 9200.0 1.25
NOD/ShiLtJ m 1054.0 442.2   44 66.67 0.4197 74.38, 2174.0 0.65
NZO/HlLtJ f 185.0 198.0   47 28.884 1.0704 -1.15
NZO/HlLtJ m 90.77 157.2   46 23.178 1.7319 -1.31
PWK/PhJ f 1623.0 416.4   48 60.1 0.2566 179.0, 2778.0 1.25
PWK/PhJ m 1396.0 550.1   47 80.23 0.394 1.35
WSB/EiJ f 1241.0 638.7   55 86.12 0.5147 109.1, 3307.0 0.62
WSB/EiJ m 1263.0 1332.0   52 184.7 1.0547 1.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 58.7591666667 94.0759379804 243.4106765491 -125.8923432157
129S1/SvImJ m 38.2439183674 93.1110310582 221.0015165449 -144.5136798102
A/J f 374.7347627119 84.8541661363 541.2858514733 208.1836739505
A/J m 249.0511770492 83.4515213281 412.8491656319 85.2531884664
C57BL/6J f 883.7278688525 83.4515213281 1047.5258574352 719.9298802697
C57BL/6J m 870.1779661017 84.8541661363 1036.7290548631 703.6268773403
C57BL/6NJ f 685.2153846154 180.7704751954 1040.0302491129 330.4005201179
C57BL/6NJ m 670.3230769231 180.7704751954 1025.1379414206 315.5082124256
CAST/EiJ f 1529.4515151515 113.4598502115 1752.1496152434 1306.7534150597
CAST/EiJ m 1130.0766666667 118.9976948139 1363.6444045137 896.5089288197
DBA/2J f 515.347826087 135.9049445834 782.1009805762 248.5946715977
DBA/2J m 578.51452 130.3554434814 834.3751574485 322.6538825515
NOD/ShiLtJ f 1620.0808510638 95.0714782756 1806.6863995942 1433.4753025335
NOD/ShiLtJ m 1053.6018181818 98.2591125928 1246.4640302359 860.7396061278
NZO/HlLtJ f 185.0015106383 95.0714782756 371.6070591687 -1.6040378921
NZO/HlLtJ m 90.7697391304 96.0993079117 279.3927035727 -97.8532253118
PWK/PhJ f 1622.875 94.0759379804 1807.5265098824 1438.2234901176
PWK/PhJ m 1395.9723404255 95.0714782756 1582.5778889559 1209.3667918952
WSB/EiJ f 1240.9254545455 87.8856220665 1413.426661123 1068.4242479679
WSB/EiJ m 1263.0769230769 90.3852375977 1440.4843553257 1085.6694908282


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 48.501542517 66.1814668385 178.4020042112 -81.3989191772
A/J both 311.8929698805 59.5071128578 428.6930621658 195.0928775953
C57BL/6J both 876.9529174771 59.5071128578 993.7530097623 760.1528251918
C57BL/6NJ both 677.7692307692 127.824028849 928.6612275212 426.8772340173
CAST/EiJ both 1329.7640909091 82.2094717491 1491.1241943637 1168.4039874545
DBA/2J both 546.9311730435 94.1577076073 731.7431797053 362.1191663816
NOD/ShiLtJ both 1336.8413346228 68.3619762533 1471.021683017 1202.6609862287
NZO/HlLtJ both 137.8856248844 67.590056522 270.5508553116 5.2203944571
PWK/PhJ both 1509.4236702128 66.8746366128 1640.6846800788 1378.1626603468
WSB/EiJ both 1252.0011888112 63.0344622838 1375.7247347592 1128.2776428632




  GWAS USING LINEAR MIXED MODELS