Project measure / variable:   CSNA03   amb_dist_OFT_in_bin8

ID, description, units MPD:90040   amb_dist_OFT_in_bin8   distance traveled in successive 5 min intervals, 60 min test (OFT), founders   [cm]  35-40 min  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in successive 5 min intervals, 60 min test (OFT), founders 35-40 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means947.6   cm 859.4   cm
Median of the strain means875.5   cm 899.2   cm
SD of the strain means± 603.2 ± 476.1
Coefficient of variation (CV)0.6366 0.554
Min–max range of strain means61.34   –   1707.0   cm 119.2   –   1475.0   cm
Mean sample size per strain43.5   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3047676.3916 3047676.3916 10.08 0.0016
strain 9 245881078.5931 27320119.8437 90.3599 < 0.0001
sex:strain 9 4279662.063 475518.007 1.5728 0.119
Residuals 841 254274575.6054 302347.8901


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 61.34 237.3   48 34.253 3.869 -1.47
129S1/SvImJ m 119.2 237.9   49 33.987 1.9962 -1.55
A/J f 379.4 403.5   59 52.54 1.0637 -0.94
A/J m 366.2 464.3   61 59.45 1.2679 -1.04
C57BL/6J f 1029.0 342.4   61 43.834 0.3329 410.5, 1853.0 0.14
C57BL/6J m 978.4 264.5   59 34.431 0.2703 416.1, 1572.0 0.25
C57BL/6NJ f 722.1 241.1   13 66.87 0.3339 214.9, 961.4 -0.37
C57BL/6NJ m 771.7 329.1   13 91.29 0.4265 182.0, 1508.0 -0.18
CAST/EiJ f 1535.0 1142.0   33 198.7 0.7436 588.6, 6781.0 0.97
CAST/EiJ m 1254.0 826.6   30 150.9 0.659 305.4, 5169.0 0.83
DBA/2J f 674.5 298.6   24 60.95 0.4427 58.89, 1343.0 -0.45
DBA/2J m 820.0 304.2   25 60.84 0.371 266.5, 1504.0 -0.08
NOD/ShiLtJ f 1581.0 822.8   47 120.0 0.5203 163.6, 5510.0 1.05
NOD/ShiLtJ m 1346.0 597.6   44 90.1 0.444 224.7, 3112.0 1.02
NZO/HlLtJ f 299.3 267.1   47 38.962 0.8924 -1.07
NZO/HlLtJ m 272.9 230.2   46 33.939 0.8435 -1.23
PWK/PhJ f 1707.0 366.1   48 52.84 0.2145 990.8, 2744.0 1.26
PWK/PhJ m 1475.0 511.5   47 74.61 0.3467 1.29
WSB/EiJ f 1487.0 952.7   55 128.5 0.6409 121.6, 6562.0 0.89
WSB/EiJ m 1191.0 743.0   52 103.0 0.624 177.0, 4419.0 0.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 61.3373333333 79.3657002606 217.1154372443 -94.4407705776
129S1/SvImJ m 119.1810204082 78.5516715598 273.3613579399 -34.9993171236
A/J f 379.3696101695 71.5858960327 519.8776018349 238.8616185041
A/J m 366.1853737705 70.4025765802 504.3707593225 227.9999882185
C57BL/6J f 1028.5540983607 70.4025765802 1166.7394839126 890.3687128087
C57BL/6J m 978.3627118644 71.5858960327 1118.8707035298 837.854720199
C57BL/6NJ f 722.1076923077 152.5041966982 1021.441214498 422.7741701174
C57BL/6NJ m 771.6769230769 152.5041966982 1071.0104452672 472.3434008867
CAST/EiJ f 1535.1545454545 95.7186359957 1723.0300077184 1347.2790831906
CAST/EiJ m 1254.3666666666 100.3905523671 1451.4121138431 1057.3212194902
DBA/2J f 674.5383333333 112.2400496958 894.841840605 454.2348260617
DBA/2J m 819.976 109.9723401837 1035.8284725444 604.1235274555
NOD/ShiLtJ f 1581.3638297872 80.2055723295 1738.7904251497 1423.9372344248
NOD/ShiLtJ m 1346.0681818182 82.8947703879 1508.7731048865 1183.3632587499
NZO/HlLtJ f 299.3289787234 80.2055723295 456.7555740859 141.9023833609
NZO/HlLtJ m 272.8900217391 81.0726847981 432.0185757033 113.761467775
PWK/PhJ f 1707.0166666667 79.3657002606 1862.7947705776 1551.2385627557
PWK/PhJ m 1475.0659574468 80.2055723295 1632.4925528093 1317.6393620843
WSB/EiJ f 1486.5581818182 74.1433366266 1632.08588912 1341.0304745164
WSB/EiJ m 1190.7038461538 76.2520983491 1340.370607249 1041.0370850587


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 90.2591768708 55.8329640148 199.8474907317 -19.3291369902
A/J both 372.77749197 50.2022492024 471.3139021212 274.2410818187
C57BL/6J both 1003.4584051125 50.2022492024 1101.9948152638 904.9219949613
C57BL/6NJ both 746.8923076923 107.8367516447 958.5530710695 535.2315443151
CAST/EiJ both 1394.7606060606 69.3547407923 1530.8893113121 1258.631900809
DBA/2J both 747.2571666667 78.5680347871 901.4696217568 593.0447115765
NOD/ShiLtJ both 1463.7160058027 57.6725168307 1576.9149732429 1350.5170383626
NZO/HlLtJ both 286.1095002313 57.0212987687 398.030264183 174.1887362796
PWK/PhJ both 1591.0413120567 56.4177459018 1701.777429229 1480.3051948845
WSB/EiJ both 1338.631013986 53.1780426228 1443.0082779965 1234.2537499756




  GWAS USING LINEAR MIXED MODELS