Project measure / variable:   CSNA03   amb_dist_OFT_in_bin4

ID, description, units MPD:90028   amb_dist_OFT_in_bin4   distance traveled in successive 5 min intervals, 60 min test (OFT), founders   [cm]  15-20 min  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in successive 5 min intervals, 60 min test (OFT), founders 15-20 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1222.0   cm 1171.0   cm
Median of the strain means1119.0   cm 1326.0   cm
SD of the strain means± 744.6 ± 639.4
Coefficient of variation (CV)0.6091 0.546
Min–max range of strain means210.8   –   2443.0   cm 165.3   –   2017.0   cm
Mean sample size per strain43.4   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3122423.4941 3122423.4941 4.2345 0.0399
strain 9 373984186.9582 41553798.5509 56.3538 < 0.0001
sex:strain 9 15719313.7232 1746590.4137 2.3687 0.012
Residuals 840 619393222.2374 737372.8836


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 210.8 745.9   48 107.7 3.5377 -1.36
129S1/SvImJ m 165.3 331.3   49 47.334 2.0041 -1.57
A/J f 434.8 483.4   59 62.93 1.1118 -1.06
A/J m 370.9 413.4   61 52.93 1.1146 -1.25
C57BL/6J f 1194.0 289.6   61 37.079 0.2426 545.5, 2008.0 -0.04
C57BL/6J m 1092.0 265.1   59 34.509 0.2428 552.2, 1935.0 -0.12
C57BL/6NJ f 817.6 149.7   13 41.526 0.1831 510.8, 1023.0 -0.54
C57BL/6NJ m 1626.0 2704.0   13 749.9 1.6634 490.7, 10548.0 0.71
CAST/EiJ f 2443.0 2522.0   33 439.0 1.0322 120.3, 11998.0 1.64
CAST/EiJ m 1557.0 546.2   30 99.72 0.3507 479.7, 3076.0 0.6
DBA/2J f 1044.0 327.4   23 68.27 0.3135 531.5, 1791.0 -0.24
DBA/2J m 1111.0 280.4   25 56.07 0.2525 718.7, 1714.0 -0.09
NOD/ShiLtJ f 2025.0 907.0   47 132.3 0.4478 493.3, 5939.0 1.08
NOD/ShiLtJ m 2017.0 939.2   44 141.6 0.4656 532.4, 5570.0 1.32
NZO/HlLtJ f 556.1 287.9   47 41.998 0.5177 185.1, 1645.0 -0.89
NZO/HlLtJ m 481.2 198.5   46 29.268 0.4125 50.81, 918.2 -1.08
PWK/PhJ f 1661.0 417.6   48 60.28 0.2515 652.8, 2955.0 0.59
PWK/PhJ m 1540.0 439.1   47 64.04 0.285 0.58
WSB/EiJ f 1838.0 942.0   55 127.0 0.5125 617.5, 6938.0 0.83
WSB/EiJ m 1749.0 1430.0   52 198.3 0.8178 597.9, 9983.0 0.9


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 210.848125 123.9432736187 454.1230059609 -32.4267559609
129S1/SvImJ m 165.3322244898 122.6720269509 406.1119125067 -75.4474635271
A/J f 434.7764915254 111.7937631758 654.20440911 215.3485739409
A/J m 370.8833278688 109.9458051009 586.6840879031 155.0825678345
C57BL/6J f 1193.6393442623 109.9458051009 1409.4401042966 977.838584228
C57BL/6J m 1091.686440678 111.7937631758 1311.1143582625 872.2585230934
C57BL/6NJ f 817.5846153846 238.1616909735 1285.0465060497 350.1227247195
C57BL/6NJ m 1625.5461538462 238.1616909735 2093.0080445112 1158.0842631811
CAST/EiJ f 2443.1 149.4812123206 2736.5005458421 2149.6994541579
CAST/EiJ m 1557.3733333333 156.7772181171 1865.0944218705 1249.6522447962
DBA/2J f 1044.2826086956 179.052200746 1395.7248576415 692.8403597498
DBA/2J m 1110.516 171.7408377313 1447.6075632237 773.4244367763
NOD/ShiLtJ f 2025.4489361702 125.2548791776 2271.2982261884 1779.5996461521
NOD/ShiLtJ m 2016.9590909091 129.4545272582 2271.0514170926 1762.8667647256
NZO/HlLtJ f 556.1234042553 125.2548791776 801.9726942735 310.2741142372
NZO/HlLtJ m 481.2015217391 126.6090253339 729.7087191642 232.6943243141
PWK/PhJ f 1660.7479166667 123.9432736187 1904.0227976276 1417.4730357058
PWK/PhJ m 1540.4808510638 125.2548791776 1786.330141082 1294.6315610457
WSB/EiJ f 1838.2454545455 115.7876491777 2065.5125401084 1610.9783689825
WSB/EiJ m 1748.7769230769 119.0808454868 1982.5078684095 1515.0459777444


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 188.0901747449 87.1928340972 359.2315825544 16.9487669354
A/J both 402.8299096971 78.3994986341 556.7118279387 248.9479914555
C57BL/6J both 1142.6628924701 78.3994986341 1296.5448107117 988.7809742285
C57BL/6NJ both 1221.5653846154 168.4057467063 1552.110857451 891.0199117798
CAST/EiJ both 2000.2366666667 108.3094282108 2212.8255590334 1787.6477742999
DBA/2J both 1077.3993043478 124.0510035597 1320.885636788 833.9129719076
NOD/ShiLtJ both 2021.2040135397 90.0656141175 2197.9840913396 1844.4239357398
NZO/HlLtJ both 518.6624629972 89.0486244332 693.4464014573 343.8785245371
PWK/PhJ both 1600.6143838653 88.1060721987 1773.5482882254 1427.6804795051
WSB/EiJ both 1793.5111888112 83.0467149621 1956.5146266479 1630.5077509745




  GWAS USING LINEAR MIXED MODELS