Project measure / variable:   CSNA03   amb_dist_OFT_in_bin3

ID, description, units MPD:90025   amb_dist_OFT_in_bin3   distance traveled in successive 5 min intervals, 60 min test (OFT), founders   [cm]  10-15 min  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in successive 5 min intervals, 60 min test (OFT), founders 10-15 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1338.0   cm 1257.0   cm
Median of the strain means1196.0   cm 1312.0   cm
SD of the strain means± 675.6 ± 684.5
Coefficient of variation (CV)0.5051 0.5447
Min–max range of strain means422.8   –   2252.0   cm 222.5   –   2150.0   cm
Mean sample size per strain43.5   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4634785.9364 4634785.9364 2.1238 0.1454
strain 9 374992760.6705 41665862.2967 19.0929 < 0.0001
sex:strain 9 15353025.5976 1705891.7331 0.7817 0.6335
Residuals 841 1835292952.0528 2182274.616


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 925.2 5544.0   48 800.2 5.9927 -0.61
129S1/SvImJ m 222.5 319.3   49 45.62 1.4355 -1.51
A/J f 422.8 492.9   59 64.17 1.1659 -1.35
A/J m 411.4 423.0   61 54.15 1.028 -1.23
C57BL/6J f 1359.0 345.4   61 44.226 0.2542 774.0, 2476.0 0.03
C57BL/6J m 1245.0 260.4   59 33.902 0.2092 651.0, 1865.0 -0.02
C57BL/6NJ f 887.5 275.8   13 76.48 0.3107 432.8, 1321.0 -0.67
C57BL/6NJ m 1380.0 1198.0   13 332.4 0.8683 696.9, 4223.0 0.18
CAST/EiJ f 2252.0 1657.0   33 288.5 0.7358 38.1, 9452.0 1.35
CAST/EiJ m 1847.0 444.5   30 81.15 0.2407 1049.0, 2822.0 0.86
DBA/2J f 1032.0 351.5   24 71.74 0.3405 1.64, 1837.0 -0.45
DBA/2J m 1158.0 394.2   25 78.84 0.3404 365.5, 2458.0 -0.14
NOD/ShiLtJ f 2168.0 1148.0   47 167.4 0.5294 992.6, 8743.0 1.23
NOD/ShiLtJ m 2121.0 628.9   44 94.81 0.2965 985.8, 4236.0 1.26
NZO/HlLtJ f 551.7 321.9   47 46.958 0.5835 31.75, 1462.0 -1.16
NZO/HlLtJ m 569.6 215.5   46 31.772 0.3783 205.8, 1068.0 -1.0
PWK/PhJ f 1724.0 505.8   48 73.0 0.2934 915.4, 4112.0 0.57
PWK/PhJ m 1461.0 395.5   47 57.68 0.2708 0.3
WSB/EiJ f 2053.0 790.2   55 106.6 0.3849 1202.0, 5443.0 1.06
WSB/EiJ m 2150.0 1358.0   52 188.3 0.6318 864.0, 9001.0 1.31


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 925.15291875 213.2230158776 1343.6646563711 506.6411811289
129S1/SvImJ m 222.4578367347 211.0360553389 636.6770328054 -191.761359336
A/J f 422.7798474576 192.3218795558 800.2670697642 45.2926251511
A/J m 411.4219836065 189.1427865525 782.669317919 40.1746492941
C57BL/6J f 1358.8295081967 189.1427865525 1730.0768425092 987.5821738843
C57BL/6J m 1245.0101694915 192.3218795558 1622.4973917981 867.522947185
C57BL/6NJ f 887.5153846154 409.7160945747 1691.7015273077 83.329241923
C57BL/6NJ m 1380.1384615385 409.7160945747 2184.3246042308 575.9523188461
CAST/EiJ f 2252.4666666666 257.1566328487 2757.2108135935 1747.7225197398
CAST/EiJ m 1846.6999999999 269.7081518973 2376.0801273589 1317.319872641
DBA/2J f 1032.1058333333 301.5428808641 1623.9708086894 440.2408579772
DBA/2J m 1157.908 295.4504774744 1737.8148744989 578.001125501
NOD/ShiLtJ f 2167.7574468085 215.4794069243 2590.6980034003 1744.8168902167
NOD/ShiLtJ m 2121.2909090909 222.7041767986 2558.4121627411 1684.1696554408
NZO/HlLtJ f 551.7053191489 215.4794069243 974.6458757407 128.7647625571
NZO/HlLtJ m 569.6347826087 217.8089817286 997.1478024277 142.1217627897
PWK/PhJ f 1723.7895833333 213.2230158776 2142.3013209544 1305.2778457122
PWK/PhJ m 1460.5191489362 215.4794069243 1883.459705528 1037.5785923444
WSB/EiJ f 2053.0545454546 199.1926712779 2444.0276804832 1662.0814104259
WSB/EiJ m 2149.6384615385 204.8580472874 2551.7315328846 1747.5453901923


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 573.8053777424 150.0002259606 868.224134329 279.3866211557
A/J both 417.1009155321 134.8728095844 681.8277493811 152.3740816831
C57BL/6J both 1301.9198388441 134.8728095844 1566.6466726931 1037.1930049952
C57BL/6NJ both 1133.8269230769 289.713028835 1702.4723979109 565.1814482429
CAST/EiJ both 2049.5833333333 186.3276824696 2415.3052130108 1683.8614536557
DBA/2J both 1095.0069166667 211.0800166049 1509.3123994159 680.7014339174
NOD/ShiLtJ both 2144.5241779497 154.942348288 2448.6432766606 1840.4050792388
NZO/HlLtJ both 560.6700508788 153.1927930176 861.3551421807 259.9849595769
PWK/PhJ both 1592.1543661347 151.5712945352 1889.6567984512 1294.6519338183
WSB/EiJ both 2101.3465034965 142.8675434005 2381.7653109697 1820.9276960233




  GWAS USING LINEAR MIXED MODELS