Project measure / variable:   CSNA03   dist_corners_OFT_in

ID, description, units MPD:90010   dist_corners_OFT_in   distance traveled in corners, 60 min test (OFT), founders   [cm]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in corners, 60 min test (OFT), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1219.0   cm 1067.0   cm
Median of the strain means1146.0   cm 1040.0   cm
SD of the strain means± 538.0 ± 563.5
Coefficient of variation (CV)0.4415 0.5279
Min–max range of strain means590.3   –   2039.0   cm 181.4   –   1888.0   cm
Mean sample size per strain43.4   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 6541548.6643 6541548.6643 7.1279 0.0077
strain 9 259927751.8572 28880861.3175 31.4698 < 0.0001
sex:strain 9 4501153.5077 500128.1675 0.545 0.842
Residuals 840 770895350.175 917732.5597


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 635.2 3467.0   48 500.4 5.4582 -1.08
129S1/SvImJ m 181.4 196.0   49 27.994 1.0801 6.8392, 839.3 -1.57
A/J f 590.3 502.9   59 65.47 0.8519 -1.17
A/J m 497.0 419.3   61 53.69 0.8437 7.4053, 2090.0 -1.01
C57BL/6J f 1230.0 338.3   61 43.316 0.275 654.6, 2177.0 0.02
C57BL/6J m 1135.0 339.6   59 44.217 0.2992 668.4, 2290.0 0.12
C57BL/6NJ f 1025.0 363.1   13 100.7 0.3542 615.5, 1722.0 -0.36
C57BL/6NJ m 881.2 580.7   13 161.1 0.659 255.3, 2659.0 -0.33
CAST/EiJ f 1647.0 506.5   33 88.17 0.3076 115.2, 3059.0 0.8
CAST/EiJ m 1624.0 425.2   30 77.63 0.2617 1141.0, 2530.0 0.99
DBA/2J f 1069.0 427.5   23 89.13 0.3999 683.4, 2372.0 -0.28
DBA/2J m 945.9 259.6   25 51.93 0.2745 578.4, 1816.0 -0.22
NOD/ShiLtJ f 1224.0 516.8   47 75.38 0.4222 340.5, 3714.0 0.01
NOD/ShiLtJ m 1271.0 408.9   44 61.65 0.3218 481.5, 2099.0 0.36
NZO/HlLtJ f 689.0 552.2   47 80.55 0.8015 228.2, 3669.0 -0.98
NZO/HlLtJ m 550.1 380.3   46 56.08 0.6914 240.2, 2196.0 -0.92
PWK/PhJ f 2039.0 435.7   48 62.88 0.2136 1271.0, 3229.0 1.52
PWK/PhJ m 1888.0 625.5   47 91.24 0.3313 1.46
WSB/EiJ f 2039.0 746.7   55 100.7 0.3663 1114.0, 5177.0 1.52
WSB/EiJ m 1701.0 924.4   52 128.2 0.5436 1.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 635.1894125 138.2730209685 906.5906086608 363.7882163392
129S1/SvImJ m 181.4266367347 136.8547986477 450.0441572978 -87.1908838284
A/J f 590.3269661017 124.7188403891 835.1241234091 345.5298087943
A/J m 497.0381196721 122.6572299589 737.7887642696 256.2874750746
C57BL/6J f 1230.4278688525 122.6572299589 1471.17851345 989.6772242549
C57BL/6J m 1135.2779661017 124.7188403891 1380.0751234091 890.4808087943
C57BL/6NJ f 1025.0 265.6968428248 1546.5076697807 503.4923302193
C57BL/6NJ m 881.2461538462 265.6968428248 1402.7538236268 359.7384840655
CAST/EiJ f 1646.7151515152 166.7635378842 1974.037309813 1319.3929932173
CAST/EiJ m 1624.4666666667 174.9030740851 1967.7650424916 1281.1682908417
DBA/2J f 1068.8652173913 199.7533870565 1460.9395917311 676.7908430515
DBA/2J m 945.908 191.5967181068 1321.9725287884 569.8434712116
NOD/ShiLtJ f 1223.9914893617 139.7362682883 1498.2647358336 949.7182428898
NOD/ShiLtJ m 1270.9090909091 144.4214602326 1554.3783952166 987.4397866016
NZO/HlLtJ f 688.9617021277 139.7362682883 963.2349485996 414.6884556558
NZO/HlLtJ m 550.1065217391 141.2469745526 827.3449705643 272.868072914
PWK/PhJ f 2039.4791666667 138.2730209685 2310.8803628275 1768.0779705059
PWK/PhJ m 1888.1872340426 139.7362682883 2162.4604805145 1613.9139875707
WSB/EiJ f 2038.6545454545 129.174480996 2292.197199041 1785.1118918681
WSB/EiJ m 1700.5673076923 132.8484214124 1961.3211425827 1439.813472802


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 408.3080246173 97.2736658102 599.2360094906 217.3800397441
A/J both 543.6825428869 87.4636856204 715.3555759322 372.0095098416
C57BL/6J both 1182.8529174771 87.4636856204 1354.5259505224 1011.1798844318
C57BL/6NJ both 953.1230769231 187.8760393013 1321.8846866658 584.3614671804
CAST/EiJ both 1635.5909090909 120.8316627503 1872.7583447544 1398.4234734274
DBA/2J both 1007.3866086956 138.3932061463 1279.0237033766 735.7495140147
NOD/ShiLtJ both 1247.4502901354 100.4785833535 1444.6688619123 1050.2317183586
NZO/HlLtJ both 619.5341119334 99.3440140313 814.5257599835 424.5424638833
PWK/PhJ both 1963.8332003546 98.2924882721 2156.7609219291 1770.9054787801
WSB/EiJ both 1869.6109265734 92.6481915802 2051.4600670702 1687.7617860766




  GWAS USING LINEAR MIXED MODELS