Project measure / variable:   CSNA03   dist_perimeter_corners_OFT_in

ID, description, units MPD:90004   dist_perimeter_corners_OFT_in   distance traveled in perimeter and corners, 60 min test (OFT), founders   [cm]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in perimeter and corners, 60 min test (OFT), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means8263.0   cm 7574.0   cm
Median of the strain means7469.0   cm 7247.0   cm
SD of the strain means± 4318.0 ± 3956.0
Coefficient of variation (CV)0.5225 0.5223
Min–max range of strain means1963.0   –   13991.0   cm 1421.0   –   12757.0   cm
Mean sample size per strain43.4   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 167247581.045 167247581.045 13.8036 0.0002
strain 9 14704177676.4288 1633797519.6032 134.8433 < 0.0001
sex:strain 9 54731398.0965 6081266.4552 0.5019 0.8737
Residuals 840 10177663214.8012 12116265.7319


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1963.0 7507.0   48 1084.0 3.8236 8.132, 49992.0 -1.46
129S1/SvImJ m 1421.0 1671.0   49 238.7 1.1756 20.154, 7315.0 -1.56
A/J f 3941.0 3327.0   59 433.1 0.8442 -1.0
A/J m 3313.0 2512.0   61 321.6 0.7582 7.4053, 10158.0 -1.08
C57BL/6J f 8226.0 1829.0   61 234.2 0.2223 5097.0, 12509.0 -0.01
C57BL/6J m 7667.0 1416.0   59 184.3 0.1846 5129.0, 10471.0 0.02
C57BL/6NJ f 6552.0 1492.0   13 413.7 0.2277 4642.0, 10518.0 -0.4
C57BL/6NJ m 6563.0 3553.0   13 985.4 0.5413 3976.0, 17869.0 -0.26
CAST/EiJ f 12860.0 4424.0   33 770.2 0.344 4325.0, 26644.0 1.06
CAST/EiJ m 11108.0 2634.0   30 480.9 0.2371 5606.0, 16144.0 0.89
DBA/2J f 6712.0 1325.0   23 276.3 0.1975 4103.0, 9149.0 -0.36
DBA/2J m 6827.0 1649.0   25 329.8 0.2415 3875.0, 10892.0 -0.19
NOD/ShiLtJ f 10231.0 4307.0   47 628.3 0.421 5002.0, 34116.0 0.46
NOD/ShiLtJ m 9902.0 2762.0   44 416.4 0.2789 4748.0, 19739.0 0.59
NZO/HlLtJ f 4339.0 1793.0   47 261.5 0.4132 1858.0, 11486.0 -0.91
NZO/HlLtJ m 3736.0 1125.0   46 165.8 0.301 1726.0, 6514.0 -0.97
PWK/PhJ f 13818.0 2195.0   48 316.9 0.1589 8536.0, 20562.0 1.29
PWK/PhJ m 12757.0 3271.0   47 477.1 0.2564 13.881, 19747.0 1.31
WSB/EiJ f 13991.0 5314.0   55 716.5 0.3798 7533.0, 36416.0 1.33
WSB/EiJ m 12448.0 5084.0   52 705.0 0.4084 6754.0, 35232.0 1.23


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1963.2905 502.4163639334 2949.429380797 977.151619203
129S1/SvImJ m 1421.2933877551 497.2632393638 2397.3177562463 445.269019264
A/J f 3940.7784745762 453.167117225 4830.2513219485 3051.3056272039
A/J m 3312.7591032786 445.6762357143 4187.5289074392 2437.9892991181
C57BL/6J f 8226.4098360655 445.6762357143 9101.1796402261 7351.6400319049
C57BL/6J m 7667.3898305085 453.167117225 8556.8626778807 6777.9169831362
C57BL/6NJ f 6552.3846153846 965.4120575774 8447.2877959139 4657.4814348553
C57BL/6NJ m 6562.9230769231 965.4120575774 8457.8262574524 4668.0198963938
CAST/EiJ f 12859.7878787879 605.9369337097 14049.116118346 11670.4596392298
CAST/EiJ m 11107.5 635.5120175078 12354.8779810272 9860.1220189729
DBA/2J f 6711.9130434782 725.8058709165 8136.5190885878 5287.3069983687
DBA/2J m 6826.64 696.1685351093 8193.0741158876 5460.2058841123
NOD/ShiLtJ f 10231.2127659575 507.7330872741 11227.7872694394 9234.6382624756
NOD/ShiLtJ m 9902.4545454546 524.7567776839 10932.4430143501 8872.4660765591
NZO/HlLtJ f 4339.0212765958 507.7330872741 5335.5957800777 3342.4467731139
NZO/HlLtJ m 3736.5 513.22225315 4743.8485950163 2729.1514049836
PWK/PhJ f 13818.1666666667 502.4163639334 14804.3055474637 12832.0277858696
PWK/PhJ m 12757.4017234043 507.7330872741 13753.9762268862 11760.8272199224
WSB/EiJ f 13990.9818181818 469.3567306219 14912.2315111783 13069.7321251853
WSB/EiJ m 12447.7307692308 482.7060287887 13395.1823594954 11500.2791789661


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1692.2919438776 353.4448089768 2386.0306302913 998.5532574638
A/J both 3626.7687889274 317.8001507294 4250.5444209626 3002.9931568922
C57BL/6J both 7946.899833287 317.8001507294 8570.6754653222 7323.1242012518
C57BL/6NJ both 6557.6538461539 682.6494125523 7897.5527347981 5217.7549575096
CAST/EiJ both 11983.643939394 439.0430195409 12845.3941191099 11121.893759678
DBA/2J both 6769.2765217391 502.8530579436 7756.2725420989 5782.2805013793
NOD/ShiLtJ both 10066.833655706 365.0899079809 10783.4292506981 9350.238060714
NZO/HlLtJ both 4037.7606382979 360.9674393354 4746.2646843116 3329.2565922841
PWK/PhJ both 13287.7841950355 357.146710282 13988.7889441652 12586.7794459057
WSB/EiJ both 13219.3562937063 336.6381034617 13880.106910948 12558.6056764646




  GWAS USING LINEAR MIXED MODELS