Project measure / variable:   CSNA03   dist_OFT_in

ID, description, units MPD:90001   dist_OFT_in   total distance traveled, 60 min test (OFT), founders   [cm]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - total distance traveled, 60 min test (OFT), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means13424.0   cm 12475.0   cm
Median of the strain means12193.0   cm 13107.0   cm
SD of the strain means± 8020.0 ± 6892.0
Coefficient of variation (CV)0.5974 0.5525
Min–max range of strain means2455.0   –   23264.0   cm 2150.0   –   21282.0   cm
Mean sample size per strain43.4   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 399619850.3923 399619850.3923 9.5101 0.0021
strain 9 46641584680.746 5182398297.8607 123.3304 < 0.0001
sex:strain 9 579342680.0616 64371408.8957 1.5319 0.1322
Residuals 840 35297185023.7135 42020458.3616


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2455.0 8288.0   48 1196.0 3.3753 30.968, 52130.0 -1.37
129S1/SvImJ m 2150.0 2791.0   49 398.8 1.2986 52.33, 11718.0 -1.5
A/J f 5054.0 5104.0   59 664.5 1.0099 99.47, 19442.0 -1.04
A/J m 4688.0 4967.0   61 635.9 1.0594 22.843, 26110.0 -1.13
C57BL/6J f 14245.0 2828.0   61 362.0 0.1985 9074.0, 21488.0 0.1
C57BL/6J m 13668.0 2527.0   59 329.0 0.1849 9494.0, 22043.0 0.17
C57BL/6NJ f 9775.0 2153.0   13 597.2 0.2203 6039.0, 12717.0 -0.45
C57BL/6NJ m 12546.0 7586.0   13 2104.0 0.6047 6546.0, 33508.0 0.01
CAST/EiJ f 23264.0 14874.0   33 2589.0 0.6393 5325.0, 76680.0 1.23
CAST/EiJ m 17278.0 5066.0   30 924.9 0.2932 8634.0, 36577.0 0.7
DBA/2J f 10141.0 2081.0   23 433.9 0.2052 6833.0, 13856.0 -0.41
DBA/2J m 10830.0 3021.0   25 604.3 0.279 4444.0, 17787.0 -0.24
NOD/ShiLtJ f 22951.0 9946.0   47 1451.0 0.4334 12417.0, 69000.0 1.19
NOD/ShiLtJ m 21282.0 6900.0   44 1040.0 0.3242 12731.0, 49517.0 1.28
NZO/HlLtJ f 5003.0 2425.0   47 353.8 0.4848 1874.0, 15420.0 -1.05
NZO/HlLtJ m 4205.0 1256.0   46 185.2 0.2988 2020.0, 7177.0 -1.2
PWK/PhJ f 20493.0 3344.0   48 482.7 0.1632 11853.0, 30807.0 0.88
PWK/PhJ m 18509.0 5153.0   47 751.6 0.2784 29.226, 31060.0 0.88
WSB/EiJ f 20854.0 8535.0   55 1151.0 0.4093 11438.0, 56489.0 0.93
WSB/EiJ m 19597.0 11158.0   52 1547.0 0.5694 10584.0, 76506.0 1.03


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2455.4165833333 935.6421409203 4291.8876059929 618.9455606737
129S1/SvImJ m 2149.5538775511 926.0455575866 3967.1888020507 331.9189530514
A/J f 5053.991016949 843.9260386258 6710.4423966183 3397.5396372798
A/J m 4688.244967213 829.9758870837 6317.315099343 3059.174835083
C57BL/6J f 14244.9344262295 829.9758870837 15874.0045583595 12615.8642940994
C57BL/6J m 13668.406779661 843.9260386258 15324.8581593303 12011.9553999917
C57BL/6NJ f 9774.5384615385 1797.8717837737 13303.3870340388 6245.6898890382
C57BL/6NJ m 12545.6153846154 1797.8717837737 16074.4639571157 9016.7668121151
CAST/EiJ f 23264.4545454546 1128.42687981 25479.3219347354 21049.5871561738
CAST/EiJ m 17277.5333333333 1183.5040960578 19600.5058487346 14954.5608179321
DBA/2J f 10141.1304347825 1351.6569278122 12794.1520035446 7488.1088660205
DBA/2J m 10830.16 1296.4637806212 13374.8488942995 8285.4711057004
NOD/ShiLtJ f 22950.8936170214 945.5433916882 24806.7987366804 21094.9884973625
NOD/ShiLtJ m 21281.9772727274 977.2463442287 23200.1086978583 19363.8458475965
NZO/HlLtJ f 5002.8723404256 945.5433916882 6858.7774600845 3146.9672207666
NZO/HlLtJ m 4205.2173913043 955.7657794938 6081.1869332101 2329.2478493985
PWK/PhJ f 20493.0625 935.6421409203 22329.5335226596 18656.5914773404
PWK/PhJ m 18508.6005531915 945.5433916882 20364.5056728504 16652.6954335326
WSB/EiJ f 20853.8181818182 874.0757025834 22569.4470843666 19138.1892792697
WSB/EiJ m 19596.75 898.9358918868 21361.1742862501 17832.3257137499


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2302.4852304422 658.2147428066 3594.4239418203 1010.5465190641
A/J both 4871.117992081 591.8342529397 6032.7656009331 3709.470383229
C57BL/6J both 13956.6706029452 591.8342529397 15118.3182117972 12795.0229940932
C57BL/6NJ both 11160.0769230769 1271.2873300103 13655.3496784724 8664.8041676815
CAST/EiJ both 20270.9939393939 817.6229522927 21875.8178284398 18666.1700503481
DBA/2J both 10485.6452173913 936.4553893493 12323.71247766 8647.5779571225
NOD/ShiLtJ both 22116.4354448744 679.901228649 23450.9402198051 20781.9306699438
NZO/HlLtJ both 4604.0448658649 672.2240197316 5923.4808756182 3284.6088561117
PWK/PhJ both 19500.8315265958 665.1087357401 20806.3017129888 18195.3613402027
WSB/EiJ both 20225.2840909091 626.9158778435 21455.7896367285 18994.7785450897




  GWAS USING LINEAR MIXED MODELS