Phenotype measure:   JaxCC1   HCT

ID, description, units MPD:89219   HCT   hematocrit (HCT)   [%]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 17-19wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - hematocrit (HCT)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means46.058   % 45.751   %
Median of the strain means46.0   % 46.467   %
SD of the strain means± 2.7419 ± 3.4113
Coefficient of variation (CV)0.0595 0.0746
Min–max range of strain means41.94   –   51.62   % 36.0   –   51.5   %
Mean sample size per strain5.8   mice 5.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1752 0.1752 0.0168 0.8972
strain 16 1265.2186 79.0762 7.5603 < 0.0001
sex:strain 16 480.58 30.0362 2.8717 0.0004
Residuals 167 1746.7193 10.4594


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 48.2 1.165   8 0.41188 0.0242 46.1, 49.4 0.78
CC002/UncJ m 48.44 2.4172   5 1.081 0.0499 45.3, 51.8 0.79
CC003/UncJ f 51.62 2.966   5 1.3264 0.0575 48.4, 54.9 2.03
CC003/UncJ m 51.5 1.1431   4 0.57155 0.0222 50.1, 52.9 1.69
CC004/TauUncJ f 45.171 2.7747   7 1.0487 0.0614 41.1, 48.5 -0.32
CC004/TauUncJ m 47.05 1.2972   8 0.45865 0.0276 45.6, 49.5 0.38
CC006/TauUncJ f 49.767 2.203   3 1.2719 0.0443 48.3, 52.3 1.35
CC006/TauUncJ m 43.175 4.6046   4 2.3023 0.1067 37.6, 48.7 -0.76
CC009/UncJ f 43.133 2.8225   6 1.1523 0.0654 38.9, 46.3 -1.07
CC009/UncJ m 43.85 1.8486   8 0.65356 0.0422 40.3, 45.8 -0.56
CC010/GeniUncJ f 48.3 4.0947   4 2.0474 0.0848 45.6, 54.4 0.82
CC013/GeniUncJ f 42.6 1.9157   7 0.72408 0.045 40.0, 45.0 -1.26
CC013/GeniUncJ m 43.3 2.0224   3 1.1676 0.0467 41.8, 45.6 -0.72
CC017/UncJ f 48.18 1.1819   5 0.52858 0.0245 47.1, 50.2 0.77
CC017/UncJ m 47.8 1.4799   5 0.66182 0.031 45.5, 49.1 0.6
CC018/UncJ f 42.057 2.1839   7 0.82545 0.0519 40.0, 46.0 -1.46
CC018/UncJ m 44.54 2.8228   5 1.2624 0.0634 42.6, 49.4 -0.35
CC019/TauUncJ f 44.217 3.8369   6 1.5664 0.0868 37.2, 47.6 -0.67
CC019/TauUncJ m 47.263 2.9515   8 1.0435 0.0624 41.1, 50.1 0.44
CC024/GeniUncJ f 44.717 1.1618   6 0.47428 0.026 43.1, 46.3 -0.49
CC024/GeniUncJ m 36.0 12.442   7 4.7026 0.3456 8.3, 44.6 -2.86
CC025/GeniUncJ f 47.575 2.843   4 1.4215 0.0598 44.4, 50.4 0.55
CC025/GeniUncJ m 45.96 3.4465   10 1.0899 0.075 38.3, 49.2 0.06
CC026/GeniUncJ f 47.743 1.8302   7 0.69174 0.0383 44.1, 49.5 0.61
CC026/GeniUncJ m 46.5 1.5937   7 0.60238 0.0343 44.0, 49.3 0.22
CC032/GeniUncJ f 41.94 3.6336   5 1.625 0.0866 38.2, 47.1 -1.5
CC032/GeniUncJ m 46.467 0.98319   6 0.40139 0.0212 45.3, 47.7 0.21
CC040/TauUncJ f 46.829 1.2579   7 0.47545 0.0269 45.3, 48.5 0.28
CC040/TauUncJ m 49.425 1.3376   4 0.6688 0.0271 47.8, 51.0 1.08
CC041/TauUncJ f 47.157 1.0533   7 0.39812 0.0223 45.7, 48.7 0.4
CC041/TauUncJ m 47.562 0.75581   8 0.26722 0.0159 46.4, 48.6 0.53
CC051/TauUncJ f 44.98 2.4854   5 1.1115 0.0553 41.5, 47.6 -0.39
CC051/TauUncJ m 45.833 1.5042   6 0.61409 0.0328 44.0, 47.3 0.02
CC068/TauUncJ f 44.86 1.8022   5 0.80598 0.0402 43.0, 47.7 -0.44
CC068/TauUncJ m 43.1 1.7088   3 0.98658 0.0396 41.5, 44.9 -0.78


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 48.2 1.1434 50.4574 45.9426
CC002/UncJ m 48.44 1.4463 51.2955 45.5845
CC003/UncJ f 51.62 1.4463 54.4755 48.7645
CC003/UncJ m 51.5 1.617 54.6925 48.3075
CC004/TauUncJ f 45.1714 1.2224 47.5847 42.7581
CC004/TauUncJ m 47.05 1.1434 49.3074 44.7926
CC006/TauUncJ f 49.7667 1.8672 53.453 46.0803
CC006/TauUncJ m 43.175 1.617 46.3675 39.9825
CC009/UncJ f 43.1333 1.3203 45.74 40.5267
CC009/UncJ m 43.85 1.1434 46.1074 41.5926
CC013/GeniUncJ f 42.6 1.2224 45.0133 40.1867
CC013/GeniUncJ m 43.3 1.8672 46.9864 39.6136
CC017/UncJ f 48.18 1.4463 51.0355 45.3245
CC017/UncJ m 47.8 1.4463 50.6555 44.9445
CC018/UncJ f 42.0571 1.2224 44.4704 39.6438
CC018/UncJ m 44.54 1.4463 47.3955 41.6845
CC019/TauUncJ f 44.2167 1.3203 46.8233 41.61
CC019/TauUncJ m 47.2625 1.1434 49.5199 45.0051
CC024/GeniUncJ f 44.7167 1.3203 47.3233 42.11
CC024/GeniUncJ m 36.0 1.2224 38.4133 33.5867
CC025/GeniUncJ f 47.575 1.617 50.7675 44.3825
CC025/GeniUncJ m 45.96 1.0227 47.9791 43.9409
CC026/GeniUncJ f 47.7429 1.2224 50.1562 45.3296
CC026/GeniUncJ m 46.5 1.2224 48.9133 44.0867
CC032/GeniUncJ f 41.94 1.4463 44.7955 39.0845
CC032/GeniUncJ m 46.4667 1.3203 49.0733 43.86
CC040/TauUncJ f 46.8286 1.2224 49.2419 44.4153
CC040/TauUncJ m 49.425 1.617 52.6175 46.2325
CC041/TauUncJ f 47.1571 1.2224 49.5704 44.7438
CC041/TauUncJ m 47.5625 1.1434 49.8199 45.3051
CC051/TauUncJ f 44.98 1.4463 47.8355 42.1245
CC051/TauUncJ m 45.8333 1.3203 48.44 43.2267
CC068/TauUncJ f 44.86 1.4463 47.7155 42.0045
CC068/TauUncJ m 43.1 1.8672 46.7864 39.4136


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 48.32 0.9219 50.14 46.5
CC003/UncJ both 51.56 1.0847 53.7016 49.4184
CC004/TauUncJ both 46.1107 0.8369 47.763 44.4584
CC006/TauUncJ both 46.4708 1.235 48.9091 44.0325
CC009/UncJ both 43.4917 0.8733 45.2158 41.7675
CC013/GeniUncJ both 42.95 1.1159 45.153 40.747
CC017/UncJ both 47.99 1.0227 50.0091 45.9709
CC018/UncJ both 43.2986 0.9468 45.1679 41.4292
CC019/TauUncJ both 45.7396 0.8733 47.4637 44.0154
CC024/GeniUncJ both 40.3583 0.8996 42.1345 38.5822
CC025/GeniUncJ both 46.7675 0.9567 48.6562 44.8788
CC026/GeniUncJ both 47.1214 0.8643 48.8279 45.415
CC032/GeniUncJ both 44.2033 0.9792 46.1365 42.2702
CC040/TauUncJ both 48.1268 1.0135 50.1278 46.1258
CC041/TauUncJ both 47.3598 0.8369 49.0121 45.7075
CC051/TauUncJ both 45.4067 0.9792 47.3398 43.4735
CC068/TauUncJ both 43.98 1.1809 46.3115 41.6485




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA