Phenotype measure:   JaxCC1   CHOL

ID, description, units MPD:89198   CHOL   total cholesterol (plasma CHOL, no fast)   [mg/dL]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 17-19wks
Procedure lipid profile
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - total cholesterol (plasma CHOL, no fast)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means89.99   mg/dL 106.7   mg/dL
Median of the strain means80.16   mg/dL 99.33   mg/dL
SD of the strain means± 27.969 ± 29.288
Coefficient of variation (CV)0.3108 0.2745
Min–max range of strain means58.62   –   161.3   mg/dL 76.38   –   173.8   mg/dL
Mean sample size per strain5.9   mice 6.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 19523.3215 19523.3215 205.3364 < 0.0001
strain 16 158309.8361 9894.3648 104.0639 < 0.0001
sex:strain 16 3393.0224 212.0639 2.2304 0.006
Residuals 171 16258.6298 95.0797


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 94.71 6.1296   7 2.3168 0.0647 85.0, 103.0 0.17
CC002/UncJ m 110.8 4.1473   5 1.8547 0.0374 106.0, 116.0 0.14
CC003/UncJ f 113.8 4.6043   5 2.0591 0.0405 106.0, 118.0 0.85
CC003/UncJ m 134.2 2.5   4 1.25 0.0186 133.0, 138.0 0.94
CC004/TauUncJ f 58.62 5.1252   8 1.812 0.0874 49.0, 64.0 -1.12
CC004/TauUncJ m 81.86 14.462   7 5.466 0.1767 62.0, 97.0 -0.85
CC006/TauUncJ f 143.0 12.728   2   9.0 0.089 134.0, 152.0 1.9
CC006/TauUncJ m 150.1 25.03   7 9.4603 0.1667 117.0, 189.0 1.48
CC009/UncJ f 161.3 11.021   6 4.4994 0.0683 150.0, 178.0 2.55
CC009/UncJ m 173.8 9.0356   8 3.1946 0.052 164.0, 191.0 2.29
CC010/GeniUncJ f 65.5 7.5939   4 3.7969 0.1159 55.0, 73.0 -0.88
CC013/GeniUncJ f 92.43 3.5989   7 1.3603 0.0389 88.0, 97.0 0.09
CC013/GeniUncJ m 102.0 3.6056   3 2.0817 0.0353 99.0, 106.0 -0.16
CC017/UncJ f 86.2 5.8907   5 2.6344 0.0683 81.0, 94.0 -0.14
CC017/UncJ m 93.0 16.628   5 7.4364 0.1788 75.0, 114.0 -0.47
CC018/UncJ f 66.57 3.994   7 1.5096 0.06 61.0, 72.0 -0.84
CC018/UncJ m 89.4 5.1284   5 2.2935 0.0574 84.0, 96.0 -0.59
CC019/TauUncJ f 64.67 8.3347   6 3.4026 0.1289 55.0, 75.0 -0.91
CC019/TauUncJ m 76.38 7.5012   8 2.6521 0.0982 66.0, 90.0 -1.03
CC024/GeniUncJ f 80.33 4.6332   6 1.8915 0.0577 76.0, 88.0 -0.35
CC024/GeniUncJ m 99.71 4.6085   7 1.7418 0.0462 95.0, 106.0 -0.24
CC025/GeniUncJ f 80.0 4.899   4 2.4495 0.0612 76.0, 86.0 -0.36
CC025/GeniUncJ m 99.33 11.779   9 3.9264 0.1186 78.0, 120.0 -0.25
CC026/GeniUncJ f 79.0 11.86   7 4.4828 0.1501 59.0, 92.0 -0.39
CC026/GeniUncJ m 85.0 8.9629   7 3.3877 0.1054 73.0, 99.0 -0.74
CC032/GeniUncJ f 78.33 12.044   6 4.9171 0.1538 66.0, 100.0 -0.42
CC032/GeniUncJ m 78.0 9.5708   6 3.9073 0.1227 68.0, 94.0 -0.98
CC040/TauUncJ f 97.14 10.885   7 4.114 0.112 75.0, 110.0 0.26
CC040/TauUncJ m 121.8 4.8563   4 2.4281 0.0399 117.0, 128.0 0.52
CC041/TauUncJ f 116.4 5.1916   7 1.9622 0.0446 111.0, 125.0 0.94
CC041/TauUncJ m 149.2 10.886   8 3.8487 0.0729 130.0, 162.0 1.45
CC051/TauUncJ f 77.88 5.4363   8 1.922 0.0698 68.0, 88.0 -0.43
CC051/TauUncJ m 91.67 10.347   6 4.2243 0.1129 81.0, 107.0 -0.51
CC068/TauUncJ f 64.0 3.0   5 1.3416 0.0469 61.0, 67.0 -0.93
CC068/TauUncJ m 77.33 16.653   3 9.6148 0.2153 64.0, 96.0 -1.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 94.7143 3.6855 101.9892 87.4394
CC002/UncJ m 110.8 4.3607 119.4078 102.1922
CC003/UncJ f 113.8 4.3607 122.4078 105.1922
CC003/UncJ m 134.25 4.8754 143.8738 124.6262
CC004/TauUncJ f 58.625 3.4475 65.4301 51.8199
CC004/TauUncJ m 81.8571 3.6855 89.1321 74.5822
CC006/TauUncJ f 143.0 6.8949 156.6101 129.3899
CC006/TauUncJ m 150.1429 3.6855 157.4178 142.8679
CC009/UncJ f 161.3333 3.9808 169.1911 153.4755
CC009/UncJ m 173.75 3.4475 180.5551 166.9449
CC013/GeniUncJ f 92.4286 3.6855 99.7035 85.1537
CC013/GeniUncJ m 102.0 5.6297 113.1126 90.8874
CC017/UncJ f 86.2 4.3607 94.8078 77.5922
CC017/UncJ m 93.0 4.3607 101.6078 84.3922
CC018/UncJ f 66.5714 3.6855 73.8463 59.2965
CC018/UncJ m 89.4 4.3607 98.0078 80.7922
CC019/TauUncJ f 64.6667 3.9808 72.5245 56.8089
CC019/TauUncJ m 76.375 3.4475 83.1801 69.5699
CC024/GeniUncJ f 80.3333 3.9808 88.1911 72.4755
CC024/GeniUncJ m 99.7143 3.6855 106.9892 92.4394
CC025/GeniUncJ f 80.0 4.8754 89.6238 70.3762
CC025/GeniUncJ m 99.3333 3.2503 105.7492 92.9175
CC026/GeniUncJ f 79.0 3.6855 86.2749 71.7251
CC026/GeniUncJ m 85.0 3.6855 92.2749 77.7251
CC032/GeniUncJ f 78.3333 3.9808 86.1911 70.4755
CC032/GeniUncJ m 78.0 3.9808 85.8578 70.1422
CC040/TauUncJ f 97.1429 3.6855 104.4178 89.8679
CC040/TauUncJ m 121.75 4.8754 131.3738 112.1262
CC041/TauUncJ f 116.4286 3.6855 123.7035 109.1537
CC041/TauUncJ m 149.25 3.4475 156.0551 142.4449
CC051/TauUncJ f 77.875 3.4475 84.6801 71.0699
CC051/TauUncJ m 91.6667 3.9808 99.5245 83.8089
CC068/TauUncJ f 64.0 4.3607 72.6078 55.3922
CC068/TauUncJ m 77.3333 5.6297 88.4459 66.2207


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 102.7571 2.8548 108.3923 97.122
CC003/UncJ both 124.025 3.2705 130.4808 117.5692
CC004/TauUncJ both 70.2411 2.5233 75.2219 65.2603
CC006/TauUncJ both 146.5714 3.909 154.2876 138.8552
CC009/UncJ both 167.5417 2.633 172.7391 162.3442
CC013/GeniUncJ both 97.2143 3.3644 103.8553 90.5732
CC017/UncJ both 89.6 3.0835 95.6866 83.5134
CC018/UncJ both 77.9857 2.8548 83.6208 72.3506
CC019/TauUncJ both 70.5208 2.633 75.7183 65.3234
CC024/GeniUncJ both 90.0238 2.7124 95.378 84.6696
CC025/GeniUncJ both 89.6667 2.9298 95.4499 83.8835
CC026/GeniUncJ both 82.0 2.606 87.1441 76.8559
CC032/GeniUncJ both 78.1667 2.8148 83.723 72.6104
CC040/TauUncJ both 109.4464 3.0558 115.4785 103.4144
CC041/TauUncJ both 132.8393 2.5233 137.8201 127.8585
CC051/TauUncJ both 84.7708 2.633 89.9683 79.5734
CC068/TauUncJ both 70.6667 3.5605 77.6949 63.6384




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA