Phenotype measure:   JaxCC1   ALT

ID, description, units MPD:89187   ALT   alanine transaminase (plasma ALT)   [IU/L]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 17-19wks
Procedure metabolic panel
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

JaxCC1 - alanine transaminase (plasma ALT)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means60.13   IU/L 61.4   IU/L
Median of the strain means44.9   IU/L 51.3   IU/L
SD of the strain means± 37.497 ± 33.086
Coefficient of variation (CV)0.6236 0.5389
Min–max range of strain means30.2   –   148.7   IU/L 29.2   –   168.3   IU/L
Mean sample size per strain6.1   mice 6.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 938.7429 938.7429 0.1873 0.6657
strain 16 220288.2688 13768.0168 2.7464 0.0006
sex:strain 16 44168.4097 2760.5256 0.5507 0.9161
Residuals 176 882320.2738 5013.1834


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 121.5 224.8   8 79.46 1.8498 27.0, 677.0 1.64
CC002/UncJ m 168.3 117.3   6 47.882 0.6968 58.0, 396.0 3.23
CC003/UncJ f 43.8 11.756   5 5.2574 0.2684 27.0, 56.0 -0.44
CC003/UncJ m 32.25 1.2583   4 0.62915 0.039 31.0, 34.0 -0.88
CC004/TauUncJ f 40.125 16.898   8 5.9745 0.4211 26.0, 73.0 -0.53
CC004/TauUncJ m 54.75 26.698   8 9.4392 0.4876 40.0, 118.0 -0.2
CC006/TauUncJ f 33.0 6.5574   3 3.7859 0.1987 26.0, 39.0 -0.72
CC006/TauUncJ m 36.714 15.305   7 5.7847 0.4169 22.0, 68.0 -0.75
CC009/UncJ f 32.5 6.9498   6 2.8373 0.2138 21.0, 40.0 -0.74
CC009/UncJ m 45.75 16.096   8 5.6907 0.3518 33.0, 73.0 -0.47
CC010/GeniUncJ f 47.25 12.738   4 6.3689 0.2696 34.0, 64.0 -0.34
CC013/GeniUncJ f 148.7 118.2   7 44.676 0.7948 59.0, 332.0 2.36
CC013/GeniUncJ m 61.0 7.5498   3 4.3589 0.1238 54.0, 69.0 -0.01
CC017/UncJ f 38.0 7.9057   5 3.5355 0.208 33.0, 52.0 -0.59
CC017/UncJ m 29.2 2.5884   5 1.1576 0.0886 26.0, 32.0 -0.97
CC018/UncJ f 38.714 9.1781   7 3.469 0.2371 29.0, 55.0 -0.57
CC018/UncJ m 47.0 20.012   5 8.9499 0.4258 30.0, 80.0 -0.44
CC019/TauUncJ f 49.167 16.192   6 6.6102 0.3293 25.0, 73.0 -0.29
CC019/TauUncJ m 42.25 12.43   8 4.3946 0.2942 30.0, 68.0 -0.58
CC024/GeniUncJ f 62.0 14.17   6 5.785 0.2286 47.0, 80.0 0.05
CC024/GeniUncJ m 63.29 9.759   7 3.6886 0.1542 46.0, 75.0 0.06
CC025/GeniUncJ f 46.0 6.7823   4 3.3912 0.1474 38.0, 53.0 -0.38
CC025/GeniUncJ m 51.3 23.514   10 7.4357 0.4584 27.0, 91.0 -0.31
CC026/GeniUncJ f 41.429 10.922   7 4.1281 0.2636 26.0, 58.0 -0.5
CC026/GeniUncJ m 39.857 12.877   7 4.8669 0.3231 27.0, 66.0 -0.65
CC032/GeniUncJ f 43.167 18.541   6 7.5693 0.4295 29.0, 79.0 -0.45
CC032/GeniUncJ m 68.17 32.677   6 13.34 0.4794 35.0, 114.0 0.2
CC040/TauUncJ f 71.14 59.5   7 22.49 0.8364 28.0, 191.0 0.29
CC040/TauUncJ m 81.75 60.53   4 30.264 0.7404 47.0, 172.0 0.62
CC041/TauUncJ f 143.6 190.3   7 71.95 1.3258 39.0, 565.0 2.23
CC041/TauUncJ m 91.38 107.3   8 37.936 1.1743 38.0, 352.0 0.91
CC051/TauUncJ f 52.0 19.479   8 6.8868 0.3746 32.0, 93.0 -0.22
CC051/TauUncJ m 45.833 14.703   6 6.0023 0.3208 27.0, 67.0 -0.47
CC068/TauUncJ f 30.2 4.9699   5 2.2226 0.1646 25.0, 37.0 -0.8
CC068/TauUncJ m 85.0 72.86   3 42.063 0.8571 39.0, 169.0 0.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 121.5 25.0329 170.9034 72.0966
CC002/UncJ m 168.3333 28.9055 225.3794 111.2872
CC003/UncJ f 43.8 31.6644 106.2909 -18.6909
CC003/UncJ m 32.25 35.4019 102.1169 -37.6169
CC004/TauUncJ f 40.125 25.0329 89.5284 -9.2784
CC004/TauUncJ m 54.75 25.0329 104.1534 5.3466
CC006/TauUncJ f 33.0 40.8786 113.6754 -47.6754
CC006/TauUncJ m 36.7143 26.7613 89.5287 -16.1001
CC009/UncJ f 32.5 28.9055 89.5461 -24.5461
CC009/UncJ m 45.75 25.0329 95.1534 -3.6534
CC013/GeniUncJ f 148.7143 26.7613 201.5287 95.8999
CC013/GeniUncJ m 61.0 40.8786 141.6754 -19.6754
CC017/UncJ f 38.0 31.6644 100.4909 -24.4909
CC017/UncJ m 29.2 31.6644 91.6909 -33.2909
CC018/UncJ f 38.7143 26.7613 91.5287 -14.1001
CC018/UncJ m 47.0 31.6644 109.4909 -15.4909
CC019/TauUncJ f 49.1667 28.9055 106.2128 -7.8794
CC019/TauUncJ m 42.25 25.0329 91.6534 -7.1534
CC024/GeniUncJ f 62.0 28.9055 119.0461 4.9539
CC024/GeniUncJ m 63.2857 26.7613 116.1001 10.4713
CC025/GeniUncJ f 46.0 35.4019 115.8669 -23.8669
CC025/GeniUncJ m 51.3 22.3901 95.4877 7.1123
CC026/GeniUncJ f 41.4286 26.7613 94.243 -11.3858
CC026/GeniUncJ m 39.8571 26.7613 92.6716 -12.9573
CC032/GeniUncJ f 43.1667 28.9055 100.2128 -13.8794
CC032/GeniUncJ m 68.1667 28.9055 125.2128 11.1206
CC040/TauUncJ f 71.1429 26.7613 123.9573 18.3284
CC040/TauUncJ m 81.75 35.4019 151.6169 11.8831
CC041/TauUncJ f 143.5714 26.7613 196.3858 90.757
CC041/TauUncJ m 91.375 25.0329 140.7784 41.9716
CC051/TauUncJ f 52.0 25.0329 101.4034 2.5966
CC051/TauUncJ m 45.8333 28.9055 102.8794 -11.2128
CC068/TauUncJ f 30.2 31.6644 92.6909 -32.2909
CC068/TauUncJ m 85.0 40.8786 165.6754 4.3246


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 144.9167 19.1192 182.6491 107.1842
CC003/UncJ both 38.025 23.7483 84.8931 -8.8431
CC004/TauUncJ both 47.4375 17.701 82.371 12.504
CC006/TauUncJ both 34.8571 24.4296 83.0699 -13.3556
CC009/UncJ both 39.125 19.1192 76.8574 1.3926
CC013/GeniUncJ both 104.8571 24.4296 153.0699 56.6444
CC017/UncJ both 33.6 22.3901 77.7877 -10.5877
CC018/UncJ both 42.8571 20.7292 83.767 1.9473
CC019/TauUncJ both 45.7083 19.1192 83.4408 7.9759
CC024/GeniUncJ both 62.6429 19.6958 101.5132 23.7725
CC025/GeniUncJ both 48.65 20.9441 89.9838 7.3162
CC026/GeniUncJ both 40.6429 18.9231 77.9883 3.2974
CC032/GeniUncJ both 55.6667 20.4393 96.0043 15.329
CC040/TauUncJ both 76.4464 22.1893 120.2378 32.655
CC041/TauUncJ both 117.4732 18.3222 153.6328 81.3137
CC051/TauUncJ both 48.9167 19.1192 86.6491 11.1842
CC068/TauUncJ both 57.6 25.8539 108.6236 6.5764




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA