Phenotype measure:   JaxCC1   ALP

ID, description, units MPD:89185   ALP   alkaline phosphatase (plasma ALP)   [IU/L]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 17-19wks
Procedure metabolic panel
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - alkaline phosphatase (plasma ALP)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means88.79   IU/L 69.09   IU/L
Median of the strain means86.75   IU/L 66.5   IU/L
SD of the strain means± 39.082 ± 29.095
Coefficient of variation (CV)0.4402 0.4211
Min–max range of strain means36.429   –   173.4   IU/L 30.571   –   137.5   IU/L
Mean sample size per strain6.1   mice 6.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 19546.0762 19546.0762 76.4665 < 0.0001
strain 16 225724.5748 14107.7859 55.1913 < 0.0001
sex:strain 16 12368.3359 773.021 3.0241 0.0002
Residuals 176 44988.4417 255.6161


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 89.62 15.454   8 5.464 0.1724 66.0, 114.0 0.02
CC002/UncJ m 71.33 18.587   6 7.588 0.2606 34.0, 85.0 0.08
CC003/UncJ f 173.4 36.17   5 16.176 0.2086 135.0, 215.0 2.16
CC003/UncJ m 137.5 15.199   4 7.5993 0.1105 124.0, 157.0 2.35
CC004/TauUncJ f 66.62 9.1486   8 3.2345 0.1373 55.0, 83.0 -0.57
CC004/TauUncJ m 66.5 7.5404   8 2.6659 0.1134 56.0, 80.0 -0.09
CC006/TauUncJ f 98.67 16.289   3 9.4045 0.1651 80.0, 110.0 0.25
CC006/TauUncJ m 62.86 8.1941   7 3.0971 0.1304 52.0, 77.0 -0.21
CC009/UncJ f 100.8 9.0646   6 3.7006 0.0899 88.0, 114.0 0.31
CC009/UncJ m 84.38 5.5275   8 1.9543 0.0655 75.0, 94.0 0.53
CC010/GeniUncJ f 86.0 17.645   4 8.8223 0.2052 70.0, 111.0 -0.07
CC013/GeniUncJ f 95.0 8.4261   7 3.1848 0.0887 85.0, 107.0 0.16
CC013/GeniUncJ m 64.33 1.5275   3 0.88192 0.0237 63.0, 66.0 -0.16
CC017/UncJ f 68.2 6.3008   5 2.8178 0.0924 63.0, 79.0 -0.53
CC017/UncJ m 41.8 6.6483   5 2.9732 0.1591 36.0, 52.0 -0.94
CC018/UncJ f 36.429 9.5544   7 3.6112 0.2623 23.0, 47.0 -1.34
CC018/UncJ m 36.0 10.124   5 4.5277 0.2812 26.0, 53.0 -1.14
CC019/TauUncJ f 147.5 17.085   6 6.975 0.1158 120.0, 172.0 1.5
CC019/TauUncJ m 95.75 15.499   8 5.4797 0.1619 72.0, 115.0 0.92
CC024/GeniUncJ f 41.833 5.2694   6 2.1512 0.126 32.0, 47.0 -1.2
CC024/GeniUncJ m 30.571 5.5635   7 2.1028 0.182 24.0, 39.0 -1.32
CC025/GeniUncJ f 65.0 18.037   4 9.0185 0.2775 43.0, 87.0 -0.61
CC025/GeniUncJ m 55.6 9.8905   10 3.1277 0.1779 40.0, 67.0 -0.46
CC026/GeniUncJ f 163.7 43.991   7 16.627 0.2687 84.0, 220.0 1.92
CC026/GeniUncJ m 117.9 23.724   7 8.9667 0.2013 87.0, 154.0 1.68
CC032/GeniUncJ f 87.5 11.095   6 4.5295 0.1268 74.0, 102.0 -0.03
CC032/GeniUncJ m 83.83 14.703   6 6.0023 0.1754 60.0, 100.0 0.51
CC040/TauUncJ f 75.71 28.418   7 10.741 0.3753 45.0, 127.0 -0.33
CC040/TauUncJ m 70.0 8.2865   4 4.1433 0.1184 58.0, 76.0 0.03
CC041/TauUncJ f 44.0 5.2599   7 1.9881 0.1195 39.0, 53.0 -1.15
CC041/TauUncJ m 35.125 2.2952   8 0.81147 0.0653 31.0, 38.0 -1.17
CC051/TauUncJ f 60.88 7.3764   8 2.6079 0.1212 51.0, 72.0 -0.71
CC051/TauUncJ m 45.667 2.9439   6 1.2019 0.0645 42.0, 49.0 -0.8
CC068/TauUncJ f 97.4 30.328   5 13.563 0.3114 68.0, 148.0 0.22
CC068/TauUncJ m 75.33 4.0415   3 2.3333 0.0536 71.0, 79.0 0.21


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 89.625 5.6526 100.7806 78.4694
CC002/UncJ m 71.3333 6.5271 84.2147 58.4519
CC003/UncJ f 173.4 7.1501 187.5109 159.2891
CC003/UncJ m 137.5 7.994 153.2764 121.7236
CC004/TauUncJ f 66.625 5.6526 77.7806 55.4694
CC004/TauUncJ m 66.5 5.6526 77.6556 55.3444
CC006/TauUncJ f 98.6667 9.2307 116.8837 80.4496
CC006/TauUncJ m 62.8571 6.0429 74.783 50.9313
CC009/UncJ f 100.8333 6.5271 113.7147 87.9519
CC009/UncJ m 84.375 5.6526 95.5306 73.2194
CC013/GeniUncJ f 95.0 6.0429 106.9259 83.0741
CC013/GeniUncJ m 64.3333 9.2307 82.5504 46.1163
CC017/UncJ f 68.2 7.1501 82.3109 54.0891
CC017/UncJ m 41.8 7.1501 55.9109 27.6891
CC018/UncJ f 36.4286 6.0429 48.3544 24.5027
CC018/UncJ m 36.0 7.1501 50.1109 21.8891
CC019/TauUncJ f 147.5 6.5271 160.3814 134.6186
CC019/TauUncJ m 95.75 5.6526 106.9056 84.5944
CC024/GeniUncJ f 41.8333 6.5271 54.7147 28.9519
CC024/GeniUncJ m 30.5714 6.0429 42.4973 18.6456
CC025/GeniUncJ f 65.0 7.994 80.7764 49.2236
CC025/GeniUncJ m 55.6 5.0558 65.5779 45.6221
CC026/GeniUncJ f 163.7143 6.0429 175.6401 151.7884
CC026/GeniUncJ m 117.8571 6.0429 129.783 105.9313
CC032/GeniUncJ f 87.5 6.5271 100.3814 74.6186
CC032/GeniUncJ m 83.8333 6.5271 96.7147 70.9519
CC040/TauUncJ f 75.7143 6.0429 87.6401 63.7884
CC040/TauUncJ m 70.0 7.994 85.7764 54.2236
CC041/TauUncJ f 44.0 6.0429 55.9259 32.0741
CC041/TauUncJ m 35.125 5.6526 46.2806 23.9694
CC051/TauUncJ f 60.875 5.6526 72.0306 49.7194
CC051/TauUncJ m 45.6667 6.5271 58.5481 32.7853
CC068/TauUncJ f 97.4 7.1501 111.5109 83.2891
CC068/TauUncJ m 75.3333 9.2307 93.5504 57.1163


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 80.4792 4.3173 88.9994 71.9589
CC003/UncJ both 155.45 5.3625 166.0332 144.8668
CC004/TauUncJ both 66.5625 3.997 74.4507 58.6743
CC006/TauUncJ both 80.7619 5.5164 91.6487 69.8751
CC009/UncJ both 92.6042 4.3173 101.1244 84.0839
CC013/GeniUncJ both 79.6667 5.5164 90.5534 68.7799
CC017/UncJ both 55.0 5.0558 64.9779 45.0221
CC018/UncJ both 36.2143 4.6808 45.452 26.9766
CC019/TauUncJ both 121.625 4.3173 130.1452 113.1048
CC024/GeniUncJ both 36.2024 4.4475 44.9796 27.4252
CC025/GeniUncJ both 60.3 4.7293 69.6335 50.9665
CC026/GeniUncJ both 140.7857 4.273 149.2186 132.3529
CC032/GeniUncJ both 85.6667 4.6153 94.7752 76.5581
CC040/TauUncJ both 72.8571 5.0105 82.7455 62.9687
CC041/TauUncJ both 39.5625 4.1373 47.7276 31.3974
CC051/TauUncJ both 53.2708 4.3173 61.7911 44.7506
CC068/TauUncJ both 86.3667 5.838 97.8881 74.8452




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA