Phenotype measure:   JaxCC1   calcium

ID, description, units MPD:89180   calcium   calcium (plasma Ca)   [mg/dL]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 17-19wks
Procedure metabolic panel
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - calcium (plasma Ca)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means9.0363   mg/dL 8.9972   mg/dL
Median of the strain means9.1083   mg/dL 9.075   mg/dL
SD of the strain means± 0.24556 ± 0.32075
Coefficient of variation (CV)0.0272 0.0356
Min–max range of strain means8.6714   –   9.3857   mg/dL 8.5   –   9.64   mg/dL
Mean sample size per strain5.9   mice 6.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1927 0.1927 2.7049 0.1019
strain 16 14.4215 0.9013 12.6529 < 0.0001
sex:strain 16 1.6676 0.1042 1.4631 0.1186
Residuals 171 12.1814 0.0712


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 8.7714 0.07559   7 0.02857 0.0086 8.7, 8.9 -1.08
CC002/UncJ m 9.04 0.20736   5 0.09274 0.0229 8.7, 9.2 0.13
CC003/UncJ f 9.24 0.15166   5 0.06782 0.0164 9.0, 9.4 0.83
CC003/UncJ m 9.075 0.12583   4 0.06292 0.0139 8.9, 9.2 0.24
CC004/TauUncJ f 9.1875 0.36425   8 0.12878 0.0396 8.6, 9.5 0.62
CC004/TauUncJ m 8.9714 0.37733   7 0.14262 0.0421 8.5, 9.6 -0.08
CC006/TauUncJ f 9.1 0.14142   2   0.1 0.0155 9.0, 9.2 0.26
CC006/TauUncJ m 9.2857 0.38483   7 0.14545 0.0414 9.0, 10.0 0.9
CC009/UncJ f 8.7 0.2   6 0.08165 0.023 8.4, 9.0 -1.37
CC009/UncJ m 8.5125 0.23566   8 0.08332 0.0277 8.0, 8.7 -1.51
CC010/GeniUncJ f 9.05 0.34157   4 0.17078 0.0377 8.7, 9.5 0.06
CC013/GeniUncJ f 8.7714 0.21381   7 0.08081 0.0244 8.5, 9.1 -1.08
CC013/GeniUncJ m 8.8 0.3   3 0.17321 0.0341 8.5, 9.1 -0.61
CC017/UncJ f 9.2 0.27386   5 0.12247 0.0298 8.9, 9.6 0.67
CC017/UncJ m 9.64 0.05477   5 0.02449 0.0057 9.6, 9.7 2.0
CC018/UncJ f 9.3857 0.38048   7 0.14381 0.0405 8.9, 10.0 1.42
CC018/UncJ m 9.16 0.78613   5 0.35157 0.0858 8.5, 10.5 0.51
CC019/TauUncJ f 9.1167 0.24014   6 0.09804 0.0263 8.8, 9.4 0.33
CC019/TauUncJ m 9.1375 0.22638   8 0.08004 0.0248 8.8, 9.5 0.44
CC024/GeniUncJ f 9.05 0.15166   6 0.06191 0.0168 8.8, 9.2 0.06
CC024/GeniUncJ m 8.7 0.24495   7 0.09258 0.0282 8.3, 9.0 -0.93
CC025/GeniUncJ f 8.75 0.1291   4 0.06455 0.0148 8.6, 8.9 -1.17
CC025/GeniUncJ m 8.6556 0.30459   9 0.10153 0.0352 8.2, 9.0 -1.07
CC026/GeniUncJ f 8.6714 0.11127   7 0.04206 0.0128 8.5, 8.8 -1.49
CC026/GeniUncJ m 8.6 0.11547   7 0.04364 0.0134 8.5, 8.8 -1.24
CC032/GeniUncJ f 9.1333 0.37238   6 0.15202 0.0408 8.5, 9.5 0.39
CC032/GeniUncJ m 9.1667 0.12111   6 0.04944 0.0132 9.0, 9.3 0.53
CC040/TauUncJ f 9.3714 0.1496   7 0.05654 0.016 9.2, 9.6 1.36
CC040/TauUncJ m 9.275 0.12583   4 0.06292 0.0136 9.1, 9.4 0.87
CC041/TauUncJ f 9.2 0.23805   7 0.08997 0.0259 9.0, 9.6 0.67
CC041/TauUncJ m 9.15 0.26186   8 0.09258 0.0286 8.8, 9.6 0.48
CC051/TauUncJ f 9.275 0.21213   8 0.075 0.0229 8.9, 9.6 0.97
CC051/TauUncJ m 9.2833 0.1169   6 0.04773 0.0126 9.2, 9.5 0.89
CC068/TauUncJ f 8.68 0.19235   5 0.08602 0.0222 8.4, 8.9 -1.45
CC068/TauUncJ m 8.5 0.2   3 0.11547 0.0235 8.3, 8.7 -1.55


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 8.7714 0.1009 8.9706 8.5723
CC002/UncJ m 9.04 0.1194 9.2756 8.8044
CC003/UncJ f 9.24 0.1194 9.4756 9.0044
CC003/UncJ m 9.075 0.1335 9.3384 8.8116
CC004/TauUncJ f 9.1875 0.0944 9.3738 9.0012
CC004/TauUncJ m 8.9714 0.1009 9.1706 8.7723
CC006/TauUncJ f 9.1 0.1887 9.4725 8.7275
CC006/TauUncJ m 9.2857 0.1009 9.4848 9.0866
CC009/UncJ f 8.7 0.109 8.9151 8.4849
CC009/UncJ m 8.5125 0.0944 8.6988 8.3262
CC013/GeniUncJ f 8.7714 0.1009 8.9706 8.5723
CC013/GeniUncJ m 8.8 0.1541 9.1042 8.4958
CC017/UncJ f 9.2 0.1194 9.4356 8.9644
CC017/UncJ m 9.64 0.1194 9.8756 9.4044
CC018/UncJ f 9.3857 0.1009 9.5848 9.1866
CC018/UncJ m 9.16 0.1194 9.3956 8.9244
CC019/TauUncJ f 9.1167 0.109 9.3318 8.9016
CC019/TauUncJ m 9.1375 0.0944 9.3238 8.9512
CC024/GeniUncJ f 9.05 0.109 9.2651 8.8349
CC024/GeniUncJ m 8.7 0.1009 8.8991 8.5009
CC025/GeniUncJ f 8.75 0.1335 9.0134 8.4866
CC025/GeniUncJ m 8.6556 0.089 8.8312 8.4799
CC026/GeniUncJ f 8.6714 0.1009 8.8706 8.4723
CC026/GeniUncJ m 8.6 0.1009 8.7991 8.4009
CC032/GeniUncJ f 9.1333 0.109 9.3484 8.9182
CC032/GeniUncJ m 9.1667 0.109 9.3818 8.9516
CC040/TauUncJ f 9.3714 0.1009 9.5706 9.1723
CC040/TauUncJ m 9.275 0.1335 9.5384 9.0116
CC041/TauUncJ f 9.2 0.1009 9.3991 9.0009
CC041/TauUncJ m 9.15 0.0944 9.3363 8.9637
CC051/TauUncJ f 9.275 0.0944 9.4613 9.0887
CC051/TauUncJ m 9.2833 0.109 9.4984 9.0682
CC068/TauUncJ f 8.68 0.1194 8.9156 8.4444
CC068/TauUncJ m 8.5 0.1541 8.8042 8.1958


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 8.9057 0.0781 9.06 8.7515
CC003/UncJ both 9.1575 0.0895 9.3342 8.9808
CC004/TauUncJ both 9.0795 0.0691 9.2158 8.9431
CC006/TauUncJ both 9.1929 0.107 9.4041 8.9816
CC009/UncJ both 8.6063 0.0721 8.7485 8.464
CC013/GeniUncJ both 8.7857 0.0921 8.9675 8.6039
CC017/UncJ both 9.42 0.0844 9.5866 9.2534
CC018/UncJ both 9.2729 0.0781 9.4271 9.1186
CC019/TauUncJ both 9.1271 0.0721 9.2693 8.9848
CC024/GeniUncJ both 8.875 0.0742 9.0216 8.7284
CC025/GeniUncJ both 8.7028 0.0802 8.8611 8.5445
CC026/GeniUncJ both 8.6357 0.0713 8.7765 8.4949
CC032/GeniUncJ both 9.15 0.077 9.3021 8.9979
CC040/TauUncJ both 9.3232 0.0836 9.4883 9.1581
CC041/TauUncJ both 9.175 0.0691 9.3113 9.0387
CC051/TauUncJ both 9.2792 0.0721 9.4214 9.1369
CC068/TauUncJ both 8.59 0.0975 8.7824 8.3976




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA