Phenotype measure:   JaxCC1   bone_area

ID, description, units MPD:89172   bone_area   bone area, whole body, head excluded   [cm2]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 13-15wks
Procedure DXA
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - bone area, whole body, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means8.0165   cm2 8.6869   cm2
Median of the strain means8.0711   cm2 8.645   cm2
SD of the strain means± 0.86704 ± 0.80604
Coefficient of variation (CV)0.1082 0.0928
Min–max range of strain means6.458   –   9.51   cm2 7.275   –   10.1   cm2
Mean sample size per strain6.8   mice 7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 13.3442 13.3442 53.7172 < 0.0001
strain 16 134.3728 8.3983 33.8075 < 0.0001
sex:strain 16 11.4021 0.7126 2.8687 0.0003
Residuals 208 51.6704 0.2484


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 8.44 0.53759   8 0.19007 0.0637 7.82, 9.45 0.49
CC002/UncJ m 9.3043 0.56083   7 0.21197 0.0603 8.72, 10.13 0.77
CC003/UncJ f 9.51 0.44362   5 0.19839 0.0466 9.2, 10.26 1.72
CC003/UncJ m 9.4175 0.31192   4 0.15596 0.0331 9.0, 9.71 0.91
CC004/TauUncJ f 8.9863 0.39699   8 0.14036 0.0442 8.41, 9.57 1.12
CC004/TauUncJ m 8.3863 0.22437   8 0.07933 0.0268 8.04, 8.66 -0.37
CC006/TauUncJ f 7.475 0.48363   4 0.24182 0.0647 7.05, 8.1 -0.62
CC006/TauUncJ m 8.2188 0.80993   8 0.28635 0.0985 7.46, 9.41 -0.58
CC009/UncJ f 8.305 0.29135   8 0.10301 0.0351 7.77, 8.73 0.33
CC009/UncJ m 9.6137 0.19791   8 0.06997 0.0206 9.36, 9.97 1.15
CC010/GeniUncJ f 6.458 0.46821   5 0.20939 0.0725 6.14, 7.26 -1.8
CC013/GeniUncJ f 9.0025 0.60412   8 0.21359 0.0671 8.26, 10.2 1.14
CC013/GeniUncJ m 9.6075 0.36764   4 0.18382 0.0383 9.28, 10.1 1.14
CC017/UncJ f 7.2 0.42417   6 0.17317 0.0589 6.46, 7.69 -0.94
CC017/UncJ m 8.154 0.32129   5 0.14369 0.0394 7.8, 8.53 -0.66
CC018/UncJ f 8.4257 0.46783   7 0.17682 0.0555 7.95, 9.16 0.47
CC018/UncJ m 9.3514 0.48392   7 0.18291 0.0517 8.44, 9.95 0.82
CC019/TauUncJ f 6.8657 0.7037   7 0.26597 0.1025 5.52, 7.62 -1.33
CC019/TauUncJ m 7.275 0.29631   8 0.10476 0.0407 6.93, 7.9 -1.75
CC024/GeniUncJ f 8.28 0.37376   7 0.14127 0.0451 7.54, 8.61 0.3
CC024/GeniUncJ m 8.7312 0.47164   8 0.16675 0.054 7.95, 9.39 0.05
CC025/GeniUncJ f 6.97 0.32272   5 0.14433 0.0463 6.54, 7.29 -1.21
CC025/GeniUncJ m 7.319 0.44478   10 0.14065 0.0608 6.36, 7.9 -1.7
CC026/GeniUncJ f 7.2175 0.41064   8 0.14518 0.0569 6.44, 7.74 -0.92
CC026/GeniUncJ m 7.885 0.44055   8 0.15576 0.0559 7.45, 8.69 -0.99
CC032/GeniUncJ f 7.9562 0.74492   8 0.26337 0.0936 6.7, 8.87 -0.07
CC032/GeniUncJ m 8.645 0.48712   8 0.17222 0.0563 7.86, 9.12 -0.05
CC040/TauUncJ f 7.9125 0.3769   8 0.13325 0.0476 7.33, 8.41 -0.12
CC040/TauUncJ m 8.8886 0.50188   7 0.18969 0.0565 8.05, 9.56 0.25
CC041/TauUncJ f 9.285 0.80472   8 0.28451 0.0867 7.77, 10.3 1.46
CC041/TauUncJ m 10.1 0.43346   8 0.15325 0.0429 9.37, 10.71 1.75
CC051/TauUncJ f 7.8213 0.64023   8 0.22636 0.0819 6.82, 8.65 -0.23
CC051/TauUncJ m 8.3075 0.32701   8 0.11562 0.0394 7.82, 8.75 -0.47
CC068/TauUncJ f 8.186 0.69684   5 0.31163 0.0851 7.68, 9.38 0.2
CC068/TauUncJ m 8.4725 0.52046   8 0.18401 0.0614 7.87, 9.44 -0.27


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 8.44 0.1762 8.7874 8.0926
CC002/UncJ m 9.3043 0.1884 9.6757 8.9329
CC003/UncJ f 9.51 0.2229 9.9494 9.0706
CC003/UncJ m 9.4175 0.2492 9.9088 8.9262
CC004/TauUncJ f 8.9863 0.1762 9.3336 8.6389
CC004/TauUncJ m 8.3863 0.1762 8.7336 8.0389
CC006/TauUncJ f 7.475 0.2492 7.9663 6.9837
CC006/TauUncJ m 8.2188 0.1762 8.5661 7.8714
CC009/UncJ f 8.305 0.1762 8.6524 7.9576
CC009/UncJ m 9.6138 0.1762 9.9611 9.2664
CC013/GeniUncJ f 9.0025 0.1762 9.3499 8.6551
CC013/GeniUncJ m 9.6075 0.2492 10.0988 9.1162
CC017/UncJ f 7.2 0.2035 7.6011 6.7989
CC017/UncJ m 8.154 0.2229 8.5934 7.7146
CC018/UncJ f 8.4257 0.1884 8.7971 8.0543
CC018/UncJ m 9.3514 0.1884 9.7228 8.98
CC019/TauUncJ f 6.8657 0.1884 7.2371 6.4943
CC019/TauUncJ m 7.275 0.1762 7.6224 6.9276
CC024/GeniUncJ f 8.28 0.1884 8.6514 7.9086
CC024/GeniUncJ m 8.7313 0.1762 9.0786 8.3839
CC025/GeniUncJ f 6.97 0.2229 7.4094 6.5306
CC025/GeniUncJ m 7.319 0.1576 7.6297 7.0083
CC026/GeniUncJ f 7.2175 0.1762 7.5649 6.8701
CC026/GeniUncJ m 7.885 0.1762 8.2324 7.5376
CC032/GeniUncJ f 7.9563 0.1762 8.3036 7.6089
CC032/GeniUncJ m 8.645 0.1762 8.9924 8.2976
CC040/TauUncJ f 7.9125 0.1762 8.2599 7.5651
CC040/TauUncJ m 8.8886 0.1884 9.26 8.5172
CC041/TauUncJ f 9.285 0.1762 9.6324 8.9376
CC041/TauUncJ m 10.1 0.1762 10.4474 9.7526
CC051/TauUncJ f 7.8213 0.1762 8.1686 7.4739
CC051/TauUncJ m 8.3075 0.1762 8.6549 7.9601
CC068/TauUncJ f 8.186 0.2229 8.6254 7.7466
CC068/TauUncJ m 8.4725 0.1762 8.8199 8.1251


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 8.8721 0.129 9.1264 8.6179
CC003/UncJ both 9.4638 0.1672 9.7933 9.1342
CC004/TauUncJ both 8.6863 0.1246 8.9319 8.4406
CC006/TauUncJ both 7.8469 0.1526 8.1477 7.546
CC009/UncJ both 8.9594 0.1246 9.205 8.7137
CC013/GeniUncJ both 9.305 0.1526 9.6059 9.0041
CC017/UncJ both 7.677 0.1509 7.9745 7.3795
CC018/UncJ both 8.8886 0.1332 9.1512 8.626
CC019/TauUncJ both 7.0704 0.129 7.3246 6.8161
CC024/GeniUncJ both 8.5056 0.129 8.7599 8.2514
CC025/GeniUncJ both 7.1445 0.1365 7.4136 6.8754
CC026/GeniUncJ both 7.5513 0.1246 7.7969 7.3056
CC032/GeniUncJ both 8.3006 0.1246 8.5463 8.055
CC040/TauUncJ both 8.4005 0.129 8.6548 8.1463
CC041/TauUncJ both 9.6925 0.1246 9.9381 9.4469
CC051/TauUncJ both 8.0644 0.1246 8.31 7.8187
CC068/TauUncJ both 8.3293 0.1421 8.6093 8.0492




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA