Phenotype measure:   JaxCC1   BMC_adj

ID, description, units MPD:89170   BMC_adj   bone mineral content to body weight ratio   [ratio]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 13-15wks
Procedure DXA
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

JaxCC1 - bone mineral content to body weight ratio



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means0.01924   ratio 0.01761   ratio
Median of the strain means0.01912   ratio 0.01742   ratio
SD of the strain means± 0.00336105 ± 0.00250349
Coefficient of variation (CV)0.1747 0.1421
Min–max range of strain means0.01455   –   0.02435   ratio 0.01359   –   0.02254   ratio
Mean sample size per strain6.8   mice 7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0003 0.0003 136.9704 < 0.0001
strain 16 0.0019 0.0001 58.8486 < 0.0001
sex:strain 16 0.0001 0.0 4.2817 < 0.0001
Residuals 208 0.0004 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 0.0231 0.00110897   8 0.00039208 0.048 0.02073, 0.02419 1.15
CC002/UncJ m 0.02254 0.00142683   7 0.00053929 0.0633 0.02033, 0.02501 1.97
CC003/UncJ f 0.02107 0.00096544   5 0.00043176 0.0458 0.02051, 0.02278 0.54
CC003/UncJ m 0.01826 0.00049304   4 0.00024652 0.027 0.01772, 0.0189 0.26
CC004/TauUncJ f 0.02295 0.00128822   8 0.00045545 0.0561 0.02134, 0.0247 1.1
CC004/TauUncJ m 0.01776 0.00184279   8 0.00065153 0.1037 0.01492, 0.02017 0.06
CC006/TauUncJ f 0.01764 0.00064603   4 0.00032302 0.0366 0.01704, 0.01834 -0.48
CC006/TauUncJ m 0.01669 0.00120586   8 0.00042634 0.0722 0.01501, 0.01827 -0.37
CC009/UncJ f 0.01944 0.00095535   8 0.00033777 0.0491 0.01818, 0.02058 0.06
CC009/UncJ m 0.01865 0.00065456   8 0.00023142 0.0351 0.0178, 0.01995 0.41
CC010/GeniUncJ f 0.01455 0.00217354   5 0.00097204 0.1494 0.01225, 0.01794 -1.4
CC013/GeniUncJ f 0.02417 0.001769   8 0.00062544 0.0732 0.02235, 0.02736 1.47
CC013/GeniUncJ m 0.0208 0.00119255   4 0.00059627 0.0573 0.02012, 0.02259 1.27
CC017/UncJ f 0.01667 0.00078452   6 0.00032028 0.0471 0.01604, 0.0181 -0.77
CC017/UncJ m 0.01656 0.00112533   5 0.00050326 0.0679 0.01515, 0.01786 -0.42
CC018/UncJ f 0.02299 0.00119314   7 0.00045096 0.0519 0.02155, 0.02477 1.12
CC018/UncJ m 0.02039 0.0015934   7 0.00060225 0.0782 0.01846, 0.02225 1.11
CC019/TauUncJ f 0.01939 0.00231106   7 0.0008735 0.1192 0.01722, 0.02432 0.04
CC019/TauUncJ m 0.01742 0.00099422   8 0.00035151 0.0571 0.01593, 0.01845 -0.08
CC024/GeniUncJ f 0.01685 0.0009352   7 0.00035347 0.0555 0.0158, 0.01847 -0.71
CC024/GeniUncJ m 0.01515 0.00089207   8 0.00031539 0.0589 0.01392, 0.01625 -0.98
CC025/GeniUncJ f 0.01885 0.00166068   5 0.00074268 0.0881 0.01641, 0.02096 -0.12
CC025/GeniUncJ m 0.01614 0.00105696   10 0.00033424 0.0655 0.01418, 0.01757 -0.59
CC026/GeniUncJ f 0.01463 0.00084295   8 0.00029803 0.0576 0.0136, 0.01622 -1.37
CC026/GeniUncJ m 0.01361 0.00110499   8 0.00039067 0.0812 0.01241, 0.01568 -1.6
CC032/GeniUncJ f 0.01821 0.0011105   8 0.00039262 0.061 0.01675, 0.01977 -0.31
CC032/GeniUncJ m 0.01627 0.00085889   8 0.00030366 0.0528 0.01469, 0.01727 -0.54
CC040/TauUncJ f 0.01481 0.00212401   8 0.00075095 0.1434 0.01193, 0.01716 -1.32
CC040/TauUncJ m 0.01626 0.00166941   7 0.00063098 0.1026 0.01481, 0.01871 -0.54
CC041/TauUncJ f 0.02435 0.00294611   8 0.00104161 0.121 0.01889, 0.02882 1.52
CC041/TauUncJ m 0.02069 0.00169739   8 0.00060012 0.0821 0.01825, 0.02289 1.23
CC051/TauUncJ f 0.01561 0.00180778   8 0.00063915 0.1158 0.01286, 0.0175 -1.08
CC051/TauUncJ m 0.01359 0.00086637   8 0.00030631 0.0638 0.01267, 0.01545 -1.61
CC068/TauUncJ f 0.02107 0.00170566   5 0.00076279 0.0809 0.01992, 0.02408 0.54
CC068/TauUncJ m 0.01865 0.00098205   8 0.00034721 0.0527 0.01748, 0.02065 0.41


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 0.0231 0.0005 0.0241 0.0221
CC002/UncJ m 0.0225 0.0005 0.0236 0.0215
CC003/UncJ f 0.0211 0.0006 0.0223 0.0198
CC003/UncJ m 0.0183 0.0007 0.0196 0.0169
CC004/TauUncJ f 0.023 0.0005 0.0239 0.022
CC004/TauUncJ m 0.0178 0.0005 0.0187 0.0168
CC006/TauUncJ f 0.0176 0.0007 0.019 0.0162
CC006/TauUncJ m 0.0167 0.0005 0.0177 0.0157
CC009/UncJ f 0.0194 0.0005 0.0204 0.0185
CC009/UncJ m 0.0186 0.0005 0.0196 0.0177
CC013/GeniUncJ f 0.0242 0.0005 0.0252 0.0232
CC013/GeniUncJ m 0.0208 0.0007 0.0222 0.0194
CC017/UncJ f 0.0167 0.0006 0.0178 0.0155
CC017/UncJ m 0.0166 0.0006 0.0178 0.0153
CC018/UncJ f 0.023 0.0005 0.024 0.0219
CC018/UncJ m 0.0204 0.0005 0.0214 0.0193
CC019/TauUncJ f 0.0194 0.0005 0.0204 0.0183
CC019/TauUncJ m 0.0174 0.0005 0.0184 0.0164
CC024/GeniUncJ f 0.0168 0.0005 0.0179 0.0158
CC024/GeniUncJ m 0.0151 0.0005 0.0161 0.0142
CC025/GeniUncJ f 0.0188 0.0006 0.0201 0.0176
CC025/GeniUncJ m 0.0161 0.0004 0.017 0.0153
CC026/GeniUncJ f 0.0146 0.0005 0.0156 0.0136
CC026/GeniUncJ m 0.0136 0.0005 0.0146 0.0126
CC032/GeniUncJ f 0.0182 0.0005 0.0192 0.0172
CC032/GeniUncJ m 0.0163 0.0005 0.0173 0.0153
CC040/TauUncJ f 0.0148 0.0005 0.0158 0.0138
CC040/TauUncJ m 0.0163 0.0005 0.0173 0.0152
CC041/TauUncJ f 0.0243 0.0005 0.0253 0.0234
CC041/TauUncJ m 0.0207 0.0005 0.0217 0.0197
CC051/TauUncJ f 0.0156 0.0005 0.0166 0.0146
CC051/TauUncJ m 0.0136 0.0005 0.0146 0.0126
CC068/TauUncJ f 0.0211 0.0006 0.0223 0.0198
CC068/TauUncJ m 0.0186 0.0005 0.0196 0.0177


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 0.0228 0.0004 0.0235 0.0221
CC003/UncJ both 0.0197 0.0005 0.0206 0.0187
CC004/TauUncJ both 0.0204 0.0004 0.0211 0.0197
CC006/TauUncJ both 0.0172 0.0004 0.018 0.0163
CC009/UncJ both 0.019 0.0004 0.0197 0.0183
CC013/GeniUncJ both 0.0225 0.0004 0.0233 0.0216
CC017/UncJ both 0.0166 0.0004 0.0175 0.0158
CC018/UncJ both 0.0217 0.0004 0.0224 0.0209
CC019/TauUncJ both 0.0184 0.0004 0.0191 0.0177
CC024/GeniUncJ both 0.016 0.0004 0.0167 0.0153
CC025/GeniUncJ both 0.0175 0.0004 0.0183 0.0167
CC026/GeniUncJ both 0.0141 0.0004 0.0148 0.0134
CC032/GeniUncJ both 0.0172 0.0004 0.0179 0.0165
CC040/TauUncJ both 0.0155 0.0004 0.0163 0.0148
CC041/TauUncJ both 0.0225 0.0004 0.0232 0.0218
CC051/TauUncJ both 0.0146 0.0004 0.0153 0.0139
CC068/TauUncJ both 0.0199 0.0004 0.0207 0.0191




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA