Phenotype measure:   JaxCC1   BMC

ID, description, units MPD:89169   BMC   bone mineral content of whole body scan, head excluded   [g]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 13-15wks
Procedure DXA
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - bone mineral content of whole body scan, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means0.3877   g 0.42907   g
Median of the strain means0.38026   g 0.40511   g
SD of the strain means± 0.07969 ± 0.08177
Coefficient of variation (CV)0.2055 0.1906
Min–max range of strain means0.26218   –   0.53534   g 0.30697   –   0.59541   g
Mean sample size per strain6.8   mice 7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0318 0.0318 20.0846 < 0.0001
strain 16 1.3387 0.0837 52.8778 < 0.0001
sex:strain 16 0.1024 0.0064 4.046 < 0.0001
Residuals 208 0.3291 0.0016


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 0.45525 0.03671   8 0.01298 0.0806 0.4205, 0.5268 0.85
CC002/UncJ m 0.48783 0.0525   7 0.01984 0.1076 0.4322, 0.5747 0.72
CC003/UncJ f 0.50194 0.04013   5 0.01795 0.0799 0.471, 0.5721 1.43
CC003/UncJ m 0.48203 0.01556   4 0.00778121 0.0323 0.4614, 0.4974 0.65
CC004/TauUncJ f 0.48342 0.04385   8 0.0155 0.0907 0.4257, 0.5451 1.2
CC004/TauUncJ m 0.40511 0.01891   8 0.00668429 0.0467 0.3779, 0.4258 -0.29
CC006/TauUncJ f 0.33415 0.03867   4 0.01934 0.1157 0.2899, 0.3764 -0.67
CC006/TauUncJ m 0.36878 0.05478   8 0.01937 0.1485 0.3024, 0.4416 -0.74
CC009/UncJ f 0.44073 0.02997   8 0.0106 0.068 0.4057, 0.4816 0.67
CC009/UncJ m 0.55052 0.01601   8 0.00565956 0.0291 0.5328, 0.585 1.49
CC010/GeniUncJ f 0.26218 0.02059   5 0.00920985 0.0785 0.2461, 0.2966 -1.58
CC013/GeniUncJ f 0.46244 0.05066   8 0.01791 0.1096 0.403, 0.554 0.94
CC013/GeniUncJ m 0.52045 0.03592   4 0.01796 0.069 0.4833, 0.5621 1.12
CC017/UncJ f 0.32048 0.0285   6 0.01164 0.0889 0.2709, 0.3549 -0.84
CC017/UncJ m 0.39316 0.02361   5 0.01056 0.0601 0.3685, 0.4235 -0.44
CC018/UncJ f 0.42473 0.04097   7 0.01549 0.0965 0.3706, 0.4679 0.46
CC018/UncJ m 0.48969 0.04517   7 0.01707 0.0922 0.4119, 0.5346 0.74
CC019/TauUncJ f 0.29241 0.0479   7 0.0181 0.1638 0.2103, 0.3416 -1.2
CC019/TauUncJ m 0.30697 0.02289   8 0.00809302 0.0746 0.2648, 0.3458 -1.49
CC024/GeniUncJ f 0.37701 0.03278   7 0.01239 0.0869 0.3272, 0.4064 -0.13
CC024/GeniUncJ m 0.41024 0.03683   8 0.01302 0.0898 0.3425, 0.4653 -0.23
CC025/GeniUncJ f 0.29354 0.02034   5 0.00909734 0.0693 0.2654, 0.3142 -1.18
CC025/GeniUncJ m 0.32111 0.02879   10 0.00910311 0.0896 0.2641, 0.3585 -1.32
CC026/GeniUncJ f 0.32196 0.02762   8 0.00976475 0.0858 0.2651, 0.3535 -0.83
CC026/GeniUncJ m 0.36819 0.03457   8 0.01222 0.0939 0.3327, 0.4343 -0.74
CC032/GeniUncJ f 0.34815 0.04848   8 0.01714 0.1393 0.27, 0.4102 -0.5
CC032/GeniUncJ m 0.3865 0.04338   8 0.01534 0.1122 0.3303, 0.4312 -0.52
CC040/TauUncJ f 0.40169 0.03971   8 0.01404 0.0988 0.3522, 0.4723 0.18
CC040/TauUncJ m 0.46666 0.04204   7 0.01589 0.0901 0.4238, 0.5287 0.46
CC041/TauUncJ f 0.53534 0.07814   8 0.02763 0.146 0.3826, 0.6332 1.85
CC041/TauUncJ m 0.59541 0.03621   8 0.0128 0.0608 0.5301, 0.6399 2.03
CC051/TauUncJ f 0.33972 0.04607   8 0.01629 0.1356 0.2764, 0.4014 -0.6
CC051/TauUncJ m 0.36241 0.01501   8 0.00530846 0.0414 0.3382, 0.3799 -0.82
CC068/TauUncJ f 0.3835 0.0565   5 0.02527 0.1473 0.3288, 0.4729 -0.05
CC068/TauUncJ m 0.37911 0.03253   8 0.0115 0.0858 0.3385, 0.4422 -0.61


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 0.4553 0.0141 0.483 0.4275
CC002/UncJ m 0.4878 0.015 0.5175 0.4582
CC003/UncJ f 0.5019 0.0178 0.537 0.4669
CC003/UncJ m 0.482 0.0199 0.5212 0.4428
CC004/TauUncJ f 0.4834 0.0141 0.5112 0.4557
CC004/TauUncJ m 0.4051 0.0141 0.4328 0.3774
CC006/TauUncJ f 0.3342 0.0199 0.3734 0.2949
CC006/TauUncJ m 0.3688 0.0141 0.3965 0.341
CC009/UncJ f 0.4407 0.0141 0.4685 0.413
CC009/UncJ m 0.5505 0.0141 0.5783 0.5228
CC013/GeniUncJ f 0.4624 0.0141 0.4902 0.4347
CC013/GeniUncJ m 0.5205 0.0199 0.5597 0.4812
CC017/UncJ f 0.3205 0.0162 0.3525 0.2885
CC017/UncJ m 0.3932 0.0178 0.4282 0.3581
CC018/UncJ f 0.4247 0.015 0.4544 0.3951
CC018/UncJ m 0.4897 0.015 0.5193 0.46
CC019/TauUncJ f 0.2924 0.015 0.3221 0.2628
CC019/TauUncJ m 0.307 0.0141 0.3347 0.2792
CC024/GeniUncJ f 0.377 0.015 0.4067 0.3474
CC024/GeniUncJ m 0.4102 0.0141 0.438 0.3825
CC025/GeniUncJ f 0.2935 0.0178 0.3286 0.2585
CC025/GeniUncJ m 0.3211 0.0126 0.3459 0.2963
CC026/GeniUncJ f 0.322 0.0141 0.3497 0.2942
CC026/GeniUncJ m 0.3682 0.0141 0.3959 0.3405
CC032/GeniUncJ f 0.3482 0.0141 0.3759 0.3204
CC032/GeniUncJ m 0.3865 0.0141 0.4142 0.3588
CC040/TauUncJ f 0.4017 0.0141 0.4294 0.374
CC040/TauUncJ m 0.4667 0.015 0.4963 0.437
CC041/TauUncJ f 0.5353 0.0141 0.5631 0.5076
CC041/TauUncJ m 0.5954 0.0141 0.6231 0.5677
CC051/TauUncJ f 0.3397 0.0141 0.3675 0.312
CC051/TauUncJ m 0.3624 0.0141 0.3901 0.3347
CC068/TauUncJ f 0.3835 0.0178 0.4186 0.3484
CC068/TauUncJ m 0.3791 0.0141 0.4068 0.3514


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 0.4715 0.0103 0.4918 0.4512
CC003/UncJ both 0.492 0.0133 0.5183 0.4657
CC004/TauUncJ both 0.4443 0.0099 0.4639 0.4247
CC006/TauUncJ both 0.3515 0.0122 0.3755 0.3275
CC009/UncJ both 0.4956 0.0099 0.5152 0.476
CC013/GeniUncJ both 0.4914 0.0122 0.5155 0.4674
CC017/UncJ both 0.3568 0.012 0.3806 0.3331
CC018/UncJ both 0.4572 0.0106 0.4782 0.4362
CC019/TauUncJ both 0.2997 0.0103 0.32 0.2794
CC024/GeniUncJ both 0.3936 0.0103 0.4139 0.3733
CC025/GeniUncJ both 0.3073 0.0109 0.3288 0.2858
CC026/GeniUncJ both 0.3451 0.0099 0.3647 0.3255
CC032/GeniUncJ both 0.3673 0.0099 0.3869 0.3477
CC040/TauUncJ both 0.4342 0.0103 0.4545 0.4139
CC041/TauUncJ both 0.5654 0.0099 0.585 0.5458
CC051/TauUncJ both 0.3511 0.0099 0.3707 0.3315
CC068/TauUncJ both 0.3813 0.0113 0.4037 0.359




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA