Phenotype measure:   JaxCC1   TTM

ID, description, units MPD:89165   TTM   total tissue mass, whole body scan, head excluded   [g]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 13-15wks
Procedure DXA
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - total tissue mass, whole body scan, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means20.399   g 24.83   g
Median of the strain means19.791   g 24.774   g
SD of the strain means± 3.2582 ± 3.5978
Coefficient of variation (CV)0.1597 0.1449
Min–max range of strain means14.743   –   28.804   g 17.707   –   30.091   g
Mean sample size per strain6.8   mice 7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 953.4339 953.4339 219.8822 < 0.0001
strain 16 2683.824 167.739 38.6842 < 0.0001
sex:strain 16 197.0267 12.3142 2.8399 0.0003
Residuals 208 901.9115 4.3361


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 19.714 1.6056   8 0.56768 0.0814 17.85, 23.12 -0.21
CC002/UncJ m 21.779 3.2857   7 1.2419 0.1509 18.74, 28.5 -0.85
CC003/UncJ f 24.04 2.4483   5 1.0949 0.1018 21.72, 28.19 1.12
CC003/UncJ m 26.482 1.4019   4 0.70093 0.0529 25.19, 28.14 0.46
CC004/TauUncJ f 20.889 2.12   8 0.74955 0.1015 17.61, 23.93 0.15
CC004/TauUncJ m 23.727 2.8497   8 1.0075 0.1201 20.59, 29.26 -0.31
CC006/TauUncJ f 18.883 1.8694   4 0.9347 0.099 17.17, 20.52 -0.47
CC006/TauUncJ m 22.252 1.7313   8 0.61211 0.0778 18.75, 24.22 -0.72
CC009/UncJ f 22.81 0.75242   8 0.26602 0.033 21.34, 23.72 0.74
CC009/UncJ m 29.738 1.076   8 0.38041 0.0362 27.56, 31.12 1.36
CC010/GeniUncJ f 18.612 1.7604   5 0.78726 0.0946 16.53, 21.25 -0.55
CC013/GeniUncJ f 18.759 1.6106   8 0.56944 0.0859 16.34, 21.23 -0.5
CC013/GeniUncJ m 25.155 2.9932   4 1.4966 0.119 21.16, 28.1 0.09
CC017/UncJ f 19.868 1.2661   6 0.51689 0.0637 17.94, 21.33 -0.16
CC017/UncJ m 24.774 0.61958   5 0.27708 0.025 24.09, 25.57 -0.02
CC018/UncJ f 18.107 1.3227   7 0.49994 0.073 16.36, 19.91 -0.7
CC018/UncJ m 23.994 1.3819   7 0.52232 0.0576 22.57, 26.88 -0.23
CC019/TauUncJ f 14.743 1.8632   7 0.70424 0.1264 12.0, 17.32 -1.74
CC019/TauUncJ m 17.707 1.3643   8 0.48237 0.077 15.96, 19.83 -1.98
CC024/GeniUncJ f 22.883 2.3294   7 0.88042 0.1018 18.5, 25.03 0.76
CC024/GeniUncJ m 27.4 2.4857   8 0.87882 0.0907 23.85, 31.34 0.71
CC025/GeniUncJ f 15.78 1.4667   5 0.65593 0.0929 14.14, 17.58 -1.42
CC025/GeniUncJ m 20.222 1.8785   10 0.59403 0.0929 16.25, 22.4 -1.28
CC026/GeniUncJ f 22.75 2.1801   8 0.77079 0.0958 18.3, 25.72 0.72
CC026/GeniUncJ m 27.792 1.2818   8 0.45319 0.0461 25.26, 29.49 0.82
CC032/GeniUncJ f 18.971 2.021   8 0.71453 0.1065 15.55, 21.15 -0.44
CC032/GeniUncJ m 23.998 3.4626   8 1.2242 0.1443 18.69, 29.13 -0.23
CC040/TauUncJ f 28.804 3.4252   8 1.211 0.1189 24.47, 34.24 2.58
CC040/TauUncJ m 30.091 4.2429   7 1.6036 0.141 24.03, 35.07 1.46
CC041/TauUncJ f 21.473 0.75762   8 0.26786 0.0353 20.14, 22.31 0.33
CC041/TauUncJ m 29.259 1.8219   8 0.64414 0.0623 26.35, 31.69 1.23
CC051/TauUncJ f 22.029 1.1034   8 0.3901 0.0501 20.75, 23.89 0.5
CC051/TauUncJ m 27.41 1.5183   8 0.53681 0.0554 24.69, 29.7 0.72
CC068/TauUncJ f 18.064 1.4484   5 0.64772 0.0802 16.4, 19.4 -0.72
CC068/TauUncJ m 20.323 1.8156   8 0.6419 0.0893 17.73, 23.26 -1.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 19.7138 0.7362 21.1652 18.2623
CC002/UncJ m 21.7786 0.787 23.3302 20.227
CC003/UncJ f 24.04 0.9312 25.8759 22.2041
CC003/UncJ m 26.4825 1.0412 28.5351 24.4299
CC004/TauUncJ f 20.8887 0.7362 22.3402 19.4373
CC004/TauUncJ m 23.7275 0.7362 25.1789 22.2761
CC006/TauUncJ f 18.8825 1.0412 20.9351 16.8299
CC006/TauUncJ m 22.2525 0.7362 23.7039 20.8011
CC009/UncJ f 22.81 0.7362 24.2614 21.3586
CC009/UncJ m 29.7375 0.7362 31.1889 28.2861
CC013/GeniUncJ f 18.7587 0.7362 20.2102 17.3073
CC013/GeniUncJ m 25.155 1.0412 27.2076 23.1024
CC017/UncJ f 19.8683 0.8501 21.5443 18.1924
CC017/UncJ m 24.774 0.9312 26.6099 22.9381
CC018/UncJ f 18.1071 0.787 19.6588 16.5555
CC018/UncJ m 23.9943 0.787 25.5459 22.4427
CC019/TauUncJ f 14.7429 0.787 16.2945 13.1912
CC019/TauUncJ m 17.7075 0.7362 19.1589 16.2561
CC024/GeniUncJ f 22.8829 0.787 24.4345 21.3312
CC024/GeniUncJ m 27.4 0.7362 28.8514 25.9486
CC025/GeniUncJ f 15.78 0.9312 17.6159 13.9441
CC025/GeniUncJ m 20.222 0.6585 21.5202 18.9238
CC026/GeniUncJ f 22.75 0.7362 24.2014 21.2986
CC026/GeniUncJ m 27.7925 0.7362 29.2439 26.3411
CC032/GeniUncJ f 18.9712 0.7362 20.4227 17.5198
CC032/GeniUncJ m 23.9975 0.7362 25.4489 22.5461
CC040/TauUncJ f 28.8037 0.7362 30.2552 27.3523
CC040/TauUncJ m 30.0914 0.787 31.643 28.5398
CC041/TauUncJ f 21.4725 0.7362 22.9239 20.0211
CC041/TauUncJ m 29.2587 0.7362 30.7102 27.8073
CC051/TauUncJ f 22.0287 0.7362 23.4802 20.5773
CC051/TauUncJ m 27.41 0.7362 28.8614 25.9586
CC068/TauUncJ f 18.064 0.9312 19.8999 16.2281
CC068/TauUncJ m 20.3225 0.7362 21.7739 18.8711


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 20.7462 0.5389 21.8085 19.6838
CC003/UncJ both 25.2612 0.6984 26.6382 23.8843
CC004/TauUncJ both 22.3081 0.5206 23.3344 21.2818
CC006/TauUncJ both 20.5675 0.6376 21.8245 19.3105
CC009/UncJ both 26.2737 0.5206 27.3 25.2475
CC013/GeniUncJ both 21.9569 0.6376 23.2138 20.6999
CC017/UncJ both 22.3212 0.6305 23.5641 21.0783
CC018/UncJ both 21.0507 0.5565 22.1479 19.9536
CC019/TauUncJ both 16.2252 0.5389 17.2875 15.1629
CC024/GeniUncJ both 25.1414 0.5389 26.2037 24.0791
CC025/GeniUncJ both 18.001 0.5703 19.1253 16.8767
CC026/GeniUncJ both 25.2712 0.5206 26.2975 24.245
CC032/GeniUncJ both 21.4844 0.5206 22.5107 20.4581
CC040/TauUncJ both 29.4476 0.5389 30.5099 28.3853
CC041/TauUncJ both 25.3656 0.5206 26.3919 24.3393
CC051/TauUncJ both 24.7194 0.5206 25.7457 23.6931
CC068/TauUncJ both 19.1932 0.5936 20.3634 18.0231




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA