Phenotype measure:   JaxCC1   lean_adj

ID, description, units MPD:89164   lean_adj   lean tissue mass to body weight ratio   [ratio]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 13-15wks
Procedure DXA
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - lean tissue mass to body weight ratio



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means0.83406   ratio 0.84873   ratio
Median of the strain means0.83491   ratio 0.85453   ratio
SD of the strain means± 0.03531 ± 0.02799
Coefficient of variation (CV)0.0423 0.033
Min–max range of strain means0.73562   –   0.88768   ratio 0.80918   –   0.89165   ratio
Mean sample size per strain6.8   mice 7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0072 0.0072 16.8992 0.0001
strain 16 0.1787 0.0112 26.136 < 0.0001
sex:strain 16 0.0462 0.0029 6.7594 < 0.0001
Residuals 208 0.0889 0.0004


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 0.85893 0.01515   8 0.0053579 0.0176 0.8264, 0.87438 0.7
CC002/UncJ m 0.87769 0.01164   7 0.0044007 0.0133 0.85325, 0.88706 1.03
CC003/UncJ f 0.88768 0.01054   5 0.00471568 0.0119 0.87673, 0.90523 1.52
CC003/UncJ m 0.85453 0.01263   4 0.00631292 0.0148 0.8425, 0.87189 0.21
CC004/TauUncJ f 0.83111 0.02082   8 0.00736246 0.0251 0.78798, 0.85124 -0.08
CC004/TauUncJ m 0.82835 0.03793   8 0.01341 0.0458 0.78547, 0.89117 -0.73
CC006/TauUncJ f 0.83009 0.02297   4 0.01149 0.0277 0.81227, 0.86375 -0.11
CC006/TauUncJ m 0.8732 0.01827   8 0.00645842 0.0209 0.84929, 0.89869 0.87
CC009/UncJ f 0.82642 0.01056   8 0.00373422 0.0128 0.80676, 0.84111 -0.22
CC009/UncJ m 0.85848 0.01138   8 0.00402414 0.0133 0.83976, 0.87571 0.35
CC010/GeniUncJ f 0.7846 0.04293   5 0.0192 0.0547 0.73895, 0.8543 -1.4
CC013/GeniUncJ f 0.87135 0.0153   8 0.0054108 0.0176 0.8533, 0.89413 1.06
CC013/GeniUncJ m 0.89165 0.01004   4 0.0050222 0.0113 0.88241, 0.90552 1.53
CC017/UncJ f 0.81315 0.019   6 0.00775738 0.0234 0.78855, 0.83209 -0.59
CC017/UncJ m 0.82088 0.03038   5 0.01358 0.037 0.78252, 0.85604 -0.99
CC018/UncJ f 0.85554 0.00770121   7 0.00291079 0.009 0.8417, 0.86276 0.61
CC018/UncJ m 0.88722 0.00790584   7 0.00298813 0.0089 0.87919, 0.89959 1.38
CC019/TauUncJ f 0.86228 0.0102   7 0.00385632 0.0118 0.85091, 0.88245 0.8
CC019/TauUncJ m 0.88335 0.00827264   8 0.00292482 0.0094 0.87349, 0.89651 1.24
CC024/GeniUncJ f 0.84767 0.01573   7 0.00594588 0.0186 0.82106, 0.86887 0.39
CC024/GeniUncJ m 0.80918 0.02202   8 0.00778448 0.0272 0.76902, 0.83251 -1.41
CC025/GeniUncJ f 0.8123 0.02488   5 0.01113 0.0306 0.78439, 0.84955 -0.62
CC025/GeniUncJ m 0.81687 0.0169   10 0.00534412 0.0207 0.79105, 0.83563 -1.14
CC026/GeniUncJ f 0.81069 0.01479   8 0.00522794 0.0182 0.7949, 0.83901 -0.66
CC026/GeniUncJ m 0.81656 0.0274   8 0.00968714 0.0336 0.78185, 0.85752 -1.15
CC032/GeniUncJ f 0.86267 0.02072   8 0.00732602 0.024 0.83199, 0.89182 0.81
CC032/GeniUncJ m 0.84834 0.02878   8 0.01017 0.0339 0.78784, 0.87764 -0.01
CC040/TauUncJ f 0.73562 0.02669   8 0.00943525 0.0363 0.70163, 0.782 -2.79
CC040/TauUncJ m 0.81992 0.02679   7 0.01012 0.0327 0.76865, 0.85837 -1.03
CC041/TauUncJ f 0.83412 0.01606   8 0.00567883 0.0193 0.8111, 0.85852 0.0
CC041/TauUncJ m 0.85455 0.03477   8 0.01229 0.0407 0.81436, 0.90578 0.21
CC051/TauUncJ f 0.83569 0.02093   8 0.00740096 0.025 0.8079, 0.86435 0.05
CC051/TauUncJ m 0.82468 0.02791   8 0.00986723 0.0338 0.7979, 0.88249 -0.86
CC068/TauUncJ f 0.85325 0.02432   5 0.01088 0.0285 0.82903, 0.89267 0.54
CC068/TauUncJ m 0.86288 0.01515   8 0.00535761 0.0176 0.84242, 0.89014 0.51


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 0.8589 0.0073 0.8733 0.8445
CC002/UncJ m 0.8777 0.0078 0.8931 0.8623
CC003/UncJ f 0.8877 0.0092 0.9059 0.8695
CC003/UncJ m 0.8545 0.0103 0.8749 0.8342
CC004/TauUncJ f 0.8311 0.0073 0.8455 0.8167
CC004/TauUncJ m 0.8283 0.0073 0.8428 0.8139
CC006/TauUncJ f 0.8301 0.0103 0.8505 0.8097
CC006/TauUncJ m 0.8732 0.0073 0.8876 0.8588
CC009/UncJ f 0.8264 0.0073 0.8408 0.812
CC009/UncJ m 0.8585 0.0073 0.8729 0.8441
CC013/GeniUncJ f 0.8714 0.0073 0.8858 0.8569
CC013/GeniUncJ m 0.8916 0.0103 0.912 0.8713
CC017/UncJ f 0.8131 0.0084 0.8298 0.7965
CC017/UncJ m 0.8209 0.0092 0.8391 0.8027
CC018/UncJ f 0.8555 0.0078 0.8709 0.8401
CC018/UncJ m 0.8872 0.0078 0.9026 0.8718
CC019/TauUncJ f 0.8623 0.0078 0.8777 0.8469
CC019/TauUncJ m 0.8834 0.0073 0.8978 0.8689
CC024/GeniUncJ f 0.8477 0.0078 0.8631 0.8323
CC024/GeniUncJ m 0.8092 0.0073 0.8236 0.7948
CC025/GeniUncJ f 0.8123 0.0092 0.8305 0.7941
CC025/GeniUncJ m 0.8169 0.0065 0.8298 0.804
CC026/GeniUncJ f 0.8107 0.0073 0.8251 0.7963
CC026/GeniUncJ m 0.8166 0.0073 0.831 0.8022
CC032/GeniUncJ f 0.8627 0.0073 0.8771 0.8483
CC032/GeniUncJ m 0.8483 0.0073 0.8628 0.8339
CC040/TauUncJ f 0.7356 0.0073 0.75 0.7212
CC040/TauUncJ m 0.8199 0.0078 0.8353 0.8045
CC041/TauUncJ f 0.8341 0.0073 0.8485 0.8197
CC041/TauUncJ m 0.8546 0.0073 0.869 0.8401
CC051/TauUncJ f 0.8357 0.0073 0.8501 0.8213
CC051/TauUncJ m 0.8247 0.0073 0.8391 0.8103
CC068/TauUncJ f 0.8532 0.0092 0.8715 0.835
CC068/TauUncJ m 0.8629 0.0073 0.8773 0.8485


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 0.8683 0.0053 0.8789 0.8578
CC003/UncJ both 0.8711 0.0069 0.8848 0.8574
CC004/TauUncJ both 0.8297 0.0052 0.8399 0.8195
CC006/TauUncJ both 0.8516 0.0063 0.8641 0.8392
CC009/UncJ both 0.8424 0.0052 0.8526 0.8323
CC013/GeniUncJ both 0.8815 0.0063 0.894 0.869
CC017/UncJ both 0.817 0.0063 0.8294 0.8047
CC018/UncJ both 0.8714 0.0055 0.8823 0.8605
CC019/TauUncJ both 0.8728 0.0053 0.8834 0.8623
CC024/GeniUncJ both 0.8284 0.0053 0.839 0.8179
CC025/GeniUncJ both 0.8146 0.0057 0.8257 0.8034
CC026/GeniUncJ both 0.8136 0.0052 0.8238 0.8034
CC032/GeniUncJ both 0.8555 0.0052 0.8657 0.8453
CC040/TauUncJ both 0.7778 0.0053 0.7883 0.7672
CC041/TauUncJ both 0.8443 0.0052 0.8545 0.8341
CC051/TauUncJ both 0.8302 0.0052 0.8404 0.82
CC068/TauUncJ both 0.8581 0.0059 0.8697 0.8464




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA