Phenotype measure:   JaxCC1   lean

ID, description, units MPD:89163   lean   lean tissue mass of whole body scan, head excluded   [g]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 13-15wks
Procedure DXA
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

JaxCC1 - lean tissue mass of whole body scan, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means16.865   g 20.735   g
Median of the strain means16.816   g 21.319   g
SD of the strain means± 2.2772 ± 2.7728
Coefficient of variation (CV)0.135 0.1337
Min–max range of strain means12.691   –   21.211   g 15.593   –   25.36   g
Mean sample size per strain6.8   mice 7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 701.4559 701.4559 267.1634 < 0.0001
strain 16 1332.6385 83.2899 31.7226 < 0.0001
sex:strain 16 141.9831 8.8739 3.3798 < 0.0001
Residuals 208 546.1183 2.6256


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 16.943 1.3427   8 0.4747 0.0792 15.388, 19.927 0.03
CC002/UncJ m 19.104 2.893   7 1.0935 0.1514 16.667, 25.049 -0.59
CC003/UncJ f 21.211 2.3525   5 1.0521 0.1109 19.109, 25.247 1.91
CC003/UncJ m 22.58 1.1977   4 0.59885 0.053 21.542, 23.649 0.67
CC004/TauUncJ f 17.528 1.5977   8 0.56488 0.0912 14.497, 19.077 0.29
CC004/TauUncJ m 19.009 1.7056   8 0.60301 0.0897 17.296, 22.516 -0.62
CC006/TauUncJ f 15.702 1.4763   4 0.73813 0.094 14.19, 17.127 -0.51
CC006/TauUncJ m 19.213 1.6508   8 0.58365 0.0859 16.455, 21.49 -0.55
CC009/UncJ f 18.732 0.81473   8 0.28805 0.0435 17.524, 19.682 0.82
CC009/UncJ m 25.36 0.92621   8 0.32746 0.0365 23.737, 26.595 1.67
CC010/GeniUncJ f 14.222 0.58091   5 0.25979 0.0408 13.744, 15.215 -1.16
CC013/GeniUncJ f 16.688 1.5826   8 0.55952 0.0948 14.404, 19.224 -0.08
CC013/GeniUncJ m 22.415 2.6978   4 1.3489 0.1204 18.875, 25.192 0.61
CC017/UncJ f 15.64 1.2975   6 0.52968 0.083 13.319, 16.883 -0.54
CC017/UncJ m 19.491 0.57394   5 0.25668 0.0294 18.788, 20.297 -0.45
CC018/UncJ f 15.795 1.1462   7 0.43323 0.0726 14.376, 17.618 -0.47
CC018/UncJ m 21.319 1.3355   7 0.50476 0.0626 19.76, 24.028 0.21
CC019/TauUncJ f 13.007 1.7157   7 0.64847 0.1319 10.554, 15.514 -1.69
CC019/TauUncJ m 15.593 1.2291   8 0.43455 0.0788 14.072, 17.47 -1.85
CC024/GeniUncJ f 18.994 1.7557   7 0.66359 0.0924 15.779, 20.469 0.94
CC024/GeniUncJ m 21.912 1.5862   8 0.5608 0.0724 18.985, 23.64 0.42
CC025/GeniUncJ f 12.691 0.97102   5 0.43425 0.0765 11.277, 13.691 -1.83
CC025/GeniUncJ m 16.275 1.3789   10 0.43603 0.0847 13.541, 18.367 -1.61
CC026/GeniUncJ f 17.86 1.4631   8 0.51728 0.0819 14.675, 19.295 0.44
CC026/GeniUncJ m 22.107 1.4304   8 0.50572 0.0647 19.655, 23.719 0.49
CC032/GeniUncJ f 16.468 1.8617   8 0.65822 0.1131 13.129, 18.451 -0.17
CC032/GeniUncJ m 20.187 2.3932   8 0.84612 0.1186 16.051, 22.979 -0.2
CC040/TauUncJ f 20.135 1.9958   8 0.70562 0.0991 16.989, 22.417 1.44
CC040/TauUncJ m 23.682 2.8026   7 1.0593 0.1183 20.18, 27.571 1.06
CC041/TauUncJ f 18.288 0.79189   8 0.27997 0.0433 17.22, 19.411 0.63
CC041/TauUncJ m 24.649 1.4447   8 0.51077 0.0586 22.635, 26.756 1.41
CC051/TauUncJ f 18.174 1.1226   8 0.39691 0.0618 16.617, 19.958 0.58
CC051/TauUncJ m 22.026 0.91209   8 0.32247 0.0414 20.985, 23.253 0.47
CC068/TauUncJ f 15.484 1.4124   5 0.63163 0.0912 13.774, 16.952 -0.61
CC068/TauUncJ m 17.576 1.6538   8 0.5847 0.0941 15.512, 20.248 -1.14


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 16.9431 0.5729 18.0725 15.8137
CC002/UncJ m 19.1044 0.6124 20.3118 17.897
CC003/UncJ f 21.2114 0.7246 22.64 19.7828
CC003/UncJ m 22.58 0.8102 24.1772 20.9828
CC004/TauUncJ f 17.5284 0.5729 18.6578 16.399
CC004/TauUncJ m 19.0093 0.5729 20.1387 17.8798
CC006/TauUncJ f 15.7018 0.8102 17.299 14.1045
CC006/TauUncJ m 19.2134 0.5729 20.3428 18.084
CC009/UncJ f 18.7323 0.5729 19.8617 17.6028
CC009/UncJ m 25.3601 0.5729 26.4895 24.2307
CC013/GeniUncJ f 16.688 0.5729 17.8174 15.5586
CC013/GeniUncJ m 22.4145 0.8102 24.0117 20.8173
CC017/UncJ f 15.6402 0.6615 16.9443 14.336
CC017/UncJ m 19.491 0.7246 20.9196 18.0624
CC018/UncJ f 15.7951 0.6124 17.0025 14.5878
CC018/UncJ m 21.3191 0.6124 22.5265 20.1118
CC019/TauUncJ f 13.007 0.6124 14.2144 11.7996
CC019/TauUncJ m 15.5933 0.5729 16.7227 14.4638
CC024/GeniUncJ f 18.9943 0.6124 20.2017 17.7869
CC024/GeniUncJ m 21.9123 0.5729 23.0417 20.7828
CC025/GeniUncJ f 12.6908 0.7246 14.1194 11.2622
CC025/GeniUncJ m 16.275 0.5124 17.2852 15.2648
CC026/GeniUncJ f 17.8599 0.5729 18.9893 16.7305
CC026/GeniUncJ m 22.1069 0.5729 23.2363 20.9775
CC032/GeniUncJ f 16.4676 0.5729 17.597 15.3382
CC032/GeniUncJ m 20.1869 0.5729 21.3163 19.0575
CC040/TauUncJ f 20.1349 0.5729 21.2643 19.0055
CC040/TauUncJ m 23.6819 0.6124 24.8892 22.4745
CC041/TauUncJ f 18.2881 0.5729 19.4175 17.1587
CC041/TauUncJ m 24.6493 0.5729 25.7787 23.5198
CC051/TauUncJ f 18.1738 0.5729 19.3032 17.0443
CC051/TauUncJ m 22.0256 0.5729 23.155 20.8962
CC068/TauUncJ f 15.484 0.7246 16.9126 14.0554
CC068/TauUncJ m 17.5764 0.5729 18.7058 16.447


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 18.0238 0.4193 18.8504 17.1971
CC003/UncJ both 21.8957 0.5435 22.9671 20.8243
CC004/TauUncJ both 18.2688 0.4051 19.0674 17.4702
CC006/TauUncJ both 17.4576 0.4961 18.4357 16.4795
CC009/UncJ both 22.0462 0.4051 22.8448 21.2476
CC013/GeniUncJ both 19.5513 0.4961 20.5293 18.5732
CC017/UncJ both 17.5656 0.4906 18.5327 16.5984
CC018/UncJ both 18.5571 0.4331 19.4109 17.7034
CC019/TauUncJ both 14.3001 0.4193 15.1268 13.4735
CC024/GeniUncJ both 20.4533 0.4193 21.2799 19.6266
CC025/GeniUncJ both 14.4829 0.4438 15.3577 13.6081
CC026/GeniUncJ both 19.9834 0.4051 20.782 19.1848
CC032/GeniUncJ both 18.3273 0.4051 19.1259 17.5286
CC040/TauUncJ both 21.9084 0.4193 22.735 21.0817
CC041/TauUncJ both 21.4687 0.4051 22.2673 20.6701
CC051/TauUncJ both 20.0997 0.4051 20.8983 19.3011
CC068/TauUncJ both 16.5302 0.4619 17.4407 15.6196




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA