Phenotype measure:   JaxCC1   fat

ID, description, units MPD:89161   fat   fat tissue mass, head excluded   [g]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 13-15wks
Procedure DXA
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - fat tissue mass, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means3.5342   g 4.0944   g
Median of the strain means3.1825   g 3.947   g
SD of the strain means± 1.5405 ± 1.287
Coefficient of variation (CV)0.4359 0.3143
Min–max range of strain means1.7359   –   8.6689   g 2.1143   –   6.4095   g
Mean sample size per strain6.8   mice 7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 19.2919 19.2919 32.3798 < 0.0001
strain 16 445.8232 27.8639 46.7672 < 0.0001
sex:strain 16 50.7455 3.1716 5.3232 < 0.0001
Residuals 208 123.9267 0.5958


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 2.7703 0.39266   8 0.13883 0.1417 2.2686, 3.4205 -0.5
CC002/UncJ m 2.674 0.48806   7 0.18447 0.1825 2.0726, 3.4513 -1.1
CC003/UncJ f 2.8284 0.17457   5 0.07807 0.0617 2.6107, 3.0508 -0.46
CC003/UncJ m 3.9024 0.42119   4 0.21059 0.1079 3.5553, 4.4911 -0.15
CC004/TauUncJ f 3.3604 0.75051   8 0.26535 0.2233 2.3107, 4.853 -0.11
CC004/TauUncJ m 4.7184 1.216   8 0.42992 0.2577 3.2944, 6.7444 0.48
CC006/TauUncJ f 3.1806 0.52197   4 0.26098 0.1641 2.4776, 3.7223 -0.23
CC006/TauUncJ m 3.0391 0.58243   8 0.20592 0.1916 2.295, 3.9073 -0.82
CC009/UncJ f 4.0777 0.37366   8 0.13211 0.0916 3.6379, 4.8677 0.35
CC009/UncJ m 4.3773 0.34845   8 0.1232 0.0796 3.8226, 4.793 0.22
CC010/GeniUncJ f 4.3906 1.3392   5 0.5989 0.305 2.4084, 6.035 0.56
CC013/GeniUncJ f 2.0707 0.10169   8 0.03595 0.0491 1.9363, 2.246 -0.95
CC013/GeniUncJ m 2.7405 0.31755   4 0.15877 0.1159 2.2853, 2.9978 -1.05
CC017/UncJ f 4.2281 0.39138   6 0.15978 0.0926 3.7706, 4.6627 0.45
CC017/UncJ m 5.2829 1.0029   5 0.44849 0.1898 4.2133, 6.4818 0.92
CC018/UncJ f 2.3122 0.30848   7 0.11659 0.1334 1.9845, 2.7461 -0.79
CC018/UncJ m 2.675 0.20718   7 0.07831 0.0775 2.2898, 2.852 -1.1
CC019/TauUncJ f 1.7359 0.17014   7 0.06431 0.098 1.446, 1.9731 -1.17
CC019/TauUncJ m 2.1143 0.18037   8 0.06377 0.0853 1.8881, 2.3598 -1.54
CC024/GeniUncJ f 3.8886 0.62664   7 0.23685 0.1611 2.7214, 4.7006 0.23
CC024/GeniUncJ m 5.4876 1.1589   8 0.40973 0.2112 4.2086, 7.7002 1.08
CC025/GeniUncJ f 3.0894 0.68127   5 0.30467 0.2205 2.3253, 4.112 -0.29
CC025/GeniUncJ m 3.947 0.74571   10 0.23581 0.1889 2.7089, 5.2882 -0.11
CC026/GeniUncJ f 4.8904 0.86073   8 0.30431 0.176 3.6252, 6.4249 0.88
CC026/GeniUncJ m 5.6855 0.77984   8 0.27572 0.1372 4.5538, 6.7636 1.24
CC032/GeniUncJ f 2.5036 0.29549   8 0.10447 0.118 2.1113, 2.9853 -0.67
CC032/GeniUncJ m 3.8107 1.5046   8 0.53195 0.3948 2.6299, 7.2359 -0.22
CC040/TauUncJ f 8.6689 1.7359   8 0.61372 0.2002 6.7733, 11.823 3.33
CC040/TauUncJ m 6.4095 1.5641   7 0.59116 0.244 3.8496, 8.536 1.8
CC041/TauUncJ f 3.1843 0.35069   8 0.12399 0.1101 2.8188, 3.9537 -0.23
CC041/TauUncJ m 4.6095 0.75225   8 0.26596 0.1632 3.7154, 5.631 0.4
CC051/TauUncJ f 3.8553 0.7363   8 0.26032 0.191 2.9868, 4.9283 0.21
CC051/TauUncJ m 5.3846 0.86013   8 0.3041 0.1597 3.5455, 6.4865 1.0
CC068/TauUncJ f 2.58 0.38226   5 0.17095 0.1482 2.2294, 3.2148 -0.62
CC068/TauUncJ m 2.7461 0.23551   8 0.08326 0.0858 2.218, 3.0122 -1.05


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 2.7703 0.2729 3.3083 2.2323
CC002/UncJ m 2.674 0.2917 3.2491 2.0988
CC003/UncJ f 2.8284 0.3452 3.509 2.1479
CC003/UncJ m 3.9024 0.3859 4.6633 3.1415
CC004/TauUncJ f 3.3604 0.2729 3.8984 2.8224
CC004/TauUncJ m 4.7184 0.2729 5.2564 4.1803
CC006/TauUncJ f 3.1806 0.3859 3.9415 2.4197
CC006/TauUncJ m 3.0391 0.2729 3.5771 2.5011
CC009/UncJ f 4.0777 0.2729 4.6157 3.5397
CC009/UncJ m 4.3773 0.2729 4.9153 3.8393
CC013/GeniUncJ f 2.0707 0.2729 2.6087 1.5327
CC013/GeniUncJ m 2.7405 0.3859 3.5014 1.9797
CC017/UncJ f 4.2281 0.3151 4.8493 3.6069
CC017/UncJ m 5.2829 0.3452 5.9634 4.6023
CC018/UncJ f 2.3122 0.2917 2.8873 1.737
CC018/UncJ m 2.675 0.2917 3.2502 2.0999
CC019/TauUncJ f 1.7359 0.2917 2.3111 1.1607
CC019/TauUncJ m 2.1143 0.2729 2.6523 1.5762
CC024/GeniUncJ f 3.8886 0.2917 4.4637 3.3134
CC024/GeniUncJ m 5.4876 0.2729 6.0256 4.9496
CC025/GeniUncJ f 3.0894 0.3452 3.77 2.4089
CC025/GeniUncJ m 3.947 0.2441 4.4282 3.4658
CC026/GeniUncJ f 4.8904 0.2729 5.4284 4.3524
CC026/GeniUncJ m 5.6855 0.2729 6.2235 5.1475
CC032/GeniUncJ f 2.5037 0.2729 3.0417 1.9656
CC032/GeniUncJ m 3.8107 0.2729 4.3487 3.2727
CC040/TauUncJ f 8.6689 0.2729 9.2069 8.1309
CC040/TauUncJ m 6.4095 0.2917 6.9846 5.8343
CC041/TauUncJ f 3.1843 0.2729 3.7223 2.6463
CC041/TauUncJ m 4.6095 0.2729 5.1475 4.0715
CC051/TauUncJ f 3.8553 0.2729 4.3933 3.3173
CC051/TauUncJ m 5.3846 0.2729 5.9226 4.8466
CC068/TauUncJ f 2.58 0.3452 3.2606 1.8995
CC068/TauUncJ m 2.7461 0.2729 3.2841 2.2081


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 2.7222 0.1997 3.1159 2.3284
CC003/UncJ both 3.3654 0.2589 3.8758 2.855
CC004/TauUncJ both 4.0394 0.193 4.4198 3.6589
CC006/TauUncJ both 3.1099 0.2363 3.5758 2.6439
CC009/UncJ both 4.2275 0.193 4.6079 3.8471
CC013/GeniUncJ both 2.4056 0.2363 2.8716 1.9397
CC017/UncJ both 4.7555 0.2337 5.2162 4.2948
CC018/UncJ both 2.4936 0.2063 2.9003 2.0869
CC019/TauUncJ both 1.9251 0.1997 2.3189 1.5313
CC024/GeniUncJ both 4.6881 0.1997 5.0819 4.2943
CC025/GeniUncJ both 3.5182 0.2114 3.935 3.1015
CC026/GeniUncJ both 5.288 0.193 5.6684 4.9075
CC032/GeniUncJ both 3.1572 0.193 3.5376 2.7767
CC040/TauUncJ both 7.5392 0.1997 7.933 7.1454
CC041/TauUncJ both 3.8969 0.193 4.2773 3.5165
CC051/TauUncJ both 4.6199 0.193 5.0004 4.2395
CC068/TauUncJ both 2.6631 0.22 3.0968 2.2293




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA