Phenotype measure:   JaxCC1   pct_fat

ID, description, units MPD:89160   pct_fat   percent fat, whole body scan, head excluded   [%]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 13-15wks
Procedure DXA
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - percent fat, whole body scan, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means16.909   % 16.206   %
Median of the strain means16.395   % 15.553   %
SD of the strain means± 4.8083 ± 3.7075
Coefficient of variation (CV)0.2844 0.2288
Min–max range of strain means11.097   –   29.919   % 10.903   –   21.266   %
Mean sample size per strain6.8   mice 7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.2113 3.2113 0.6845 0.409
strain 16 3602.5742 225.1609 47.9945 < 0.0001
sex:strain 16 526.0527 32.8783 7.0082 < 0.0001
Residuals 208 975.8091 4.6914


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 14.028 1.3844   8 0.48946 0.0987 12.39, 16.95 -0.6
CC002/UncJ m 12.27 1.3159   7 0.49737 0.1072 11.06, 14.88 -1.06
CC003/UncJ f 11.822 0.90107   5 0.40297 0.0762 10.44, 12.96 -1.06
CC003/UncJ m 14.73 1.2456   4 0.62282 0.0846 13.1, 15.96 -0.4
CC004/TauUncJ f 15.991 2.4501   8 0.86625 0.1532 12.37, 20.28 -0.19
CC004/TauUncJ m 19.627 2.8459   8 1.0062 0.145 16.0, 23.05 0.92
CC006/TauUncJ f 16.8 1.8008   4 0.90042 0.1072 14.43, 18.26 -0.02
CC006/TauUncJ m 13.668 2.4778   8 0.87603 0.1813 11.27, 17.64 -0.68
CC009/UncJ f 17.89 1.6854   8 0.59588 0.0942 15.6, 21.34 0.2
CC009/UncJ m 14.715 0.97802   8 0.34578 0.0665 13.37, 16.03 -0.4
CC010/GeniUncJ f 23.23 5.2954   5 2.3682 0.228 14.57, 28.4 1.31
CC013/GeniUncJ f 11.097 0.91426   8 0.32324 0.0824 9.45, 12.27 -1.21
CC013/GeniUncJ m 10.903 0.42169   4 0.21085 0.0387 10.35, 11.27 -1.43
CC017/UncJ f 21.352 2.4603   6 1.0044 0.1152 18.9, 25.76 0.92
CC017/UncJ m 21.266 3.5958   5 1.6081 0.1691 17.19, 25.65 1.36
CC018/UncJ f 12.757 1.2833   7 0.48505 0.1006 11.51, 14.68 -0.86
CC018/UncJ m 11.167 0.93493   7 0.35337 0.0837 9.87, 12.45 -1.36
CC019/TauUncJ f 11.821 0.64641   7 0.24432 0.0547 10.43, 12.33 -1.06
CC019/TauUncJ m 11.949 0.64481   8 0.22798 0.054 10.96, 12.67 -1.15
CC024/GeniUncJ f 16.911 1.3351   7 0.50463 0.0789 14.71, 18.78 0.0
CC024/GeniUncJ m 19.889 2.6716   8 0.94455 0.1343 16.78, 24.57 0.99
CC025/GeniUncJ f 19.454 2.8876   5 1.2914 0.1484 15.44, 23.39 0.53
CC025/GeniUncJ m 19.422 2.4965   10 0.78948 0.1285 16.54, 24.28 0.87
CC026/GeniUncJ f 21.385 2.0825   8 0.73626 0.0974 18.09, 24.98 0.93
CC026/GeniUncJ m 20.485 2.834   8 1.002 0.1383 16.2, 24.13 1.15
CC032/GeniUncJ f 13.251 1.4325   8 0.50648 0.1081 11.55, 15.57 -0.76
CC032/GeniUncJ m 15.553 4.0051   8 1.416 0.2575 11.57, 24.84 -0.18
CC040/TauUncJ f 29.919 3.0233   8 1.0689 0.101 25.17, 34.53 2.71
CC040/TauUncJ m 21.041 2.7504   7 1.0396 0.1307 16.02, 24.34 1.3
CC041/TauUncJ f 14.839 1.6409   8 0.58014 0.1106 12.68, 18.51 -0.43
CC041/TauUncJ m 15.713 2.0681   8 0.73119 0.1316 13.82, 18.76 -0.13
CC051/TauUncJ f 17.494 3.1766   8 1.1231 0.1816 13.34, 22.11 0.12
CC051/TauUncJ m 19.564 2.429   8 0.85877 0.1242 14.36, 21.84 0.91
CC068/TauUncJ f 14.328 2.1008   5 0.93952 0.1466 11.89, 16.77 -0.54
CC068/TauUncJ m 13.54 0.93442   8 0.33037 0.069 12.51, 15.01 -0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 14.0275 0.7658 15.5372 12.5178
CC002/UncJ m 12.27 0.8187 13.8839 10.6561
CC003/UncJ f 11.822 0.9686 13.7316 9.9124
CC003/UncJ m 14.73 1.083 16.865 12.595
CC004/TauUncJ f 15.9912 0.7658 17.5009 14.4816
CC004/TauUncJ m 19.6275 0.7658 21.1372 18.1178
CC006/TauUncJ f 16.8 1.083 18.935 14.665
CC006/TauUncJ m 13.6675 0.7658 15.1772 12.1578
CC009/UncJ f 17.89 0.7658 19.3997 16.3803
CC009/UncJ m 14.715 0.7658 16.2247 13.2053
CC013/GeniUncJ f 11.0975 0.7658 12.6072 9.5878
CC013/GeniUncJ m 10.9025 1.083 13.0375 8.7675
CC017/UncJ f 21.3517 0.8843 23.0949 19.6084
CC017/UncJ m 21.266 0.9686 23.1756 19.3564
CC018/UncJ f 12.7571 0.8187 14.3711 11.1432
CC018/UncJ m 11.1671 0.8187 12.7811 9.5532
CC019/TauUncJ f 11.8214 0.8187 13.4354 10.2075
CC019/TauUncJ m 11.9487 0.7658 13.4584 10.4391
CC024/GeniUncJ f 16.9114 0.8187 18.5254 15.2975
CC024/GeniUncJ m 19.8887 0.7658 21.3984 18.3791
CC025/GeniUncJ f 19.454 0.9686 21.3636 17.5444
CC025/GeniUncJ m 19.422 0.6849 20.7723 18.0717
CC026/GeniUncJ f 21.385 0.7658 22.8947 19.8753
CC026/GeniUncJ m 20.485 0.7658 21.9947 18.9753
CC032/GeniUncJ f 13.2512 0.7658 14.7609 11.7416
CC032/GeniUncJ m 15.5525 0.7658 17.0622 14.0428
CC040/TauUncJ f 29.9187 0.7658 31.4284 28.4091
CC040/TauUncJ m 21.0414 0.8187 22.6554 19.4275
CC041/TauUncJ f 14.8387 0.7658 16.3484 13.3291
CC041/TauUncJ m 15.7125 0.7658 17.2222 14.2028
CC051/TauUncJ f 17.4937 0.7658 19.0034 15.9841
CC051/TauUncJ m 19.5637 0.7658 21.0734 18.0541
CC068/TauUncJ f 14.328 0.9686 16.2376 12.4184
CC068/TauUncJ m 13.54 0.7658 15.0497 12.0303


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 13.1487 0.5605 14.2537 12.0438
CC003/UncJ both 13.276 0.7265 14.7082 11.8438
CC004/TauUncJ both 17.8094 0.5415 18.8769 16.7419
CC006/TauUncJ both 15.2337 0.6632 16.5412 13.9263
CC009/UncJ both 16.3025 0.5415 17.37 15.235
CC013/GeniUncJ both 11.0 0.6632 12.3074 9.6926
CC017/UncJ both 21.3088 0.6558 22.6017 20.016
CC018/UncJ both 11.9621 0.5789 13.1034 10.8209
CC019/TauUncJ both 11.8851 0.5605 12.9901 10.7801
CC024/GeniUncJ both 18.4001 0.5605 19.5051 17.2951
CC025/GeniUncJ both 19.438 0.5932 20.6074 18.2686
CC026/GeniUncJ both 20.935 0.5415 22.0025 19.8675
CC032/GeniUncJ both 14.4019 0.5415 15.4694 13.3344
CC040/TauUncJ both 25.4801 0.5605 26.5851 24.3751
CC041/TauUncJ both 15.2756 0.5415 16.3431 14.2081
CC051/TauUncJ both 18.5287 0.5415 19.5963 17.4612
CC068/TauUncJ both 13.934 0.6174 15.1512 12.7168




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA