Phenotype measure:   JaxCC1   transitions_LD

ID, description, units MPD:89093   transitions_LD   number of transitions between light and dark zones, 20 min test   [n]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 8-10wks
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JaxCC1 - number of transitions between light and dark zones, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means59.41   n 61.86   n
Median of the strain means56.19   n 61.2   n
SD of the strain means± 37.692 ± 30.625
Coefficient of variation (CV)0.6344 0.4951
Min–max range of strain means2.0   –   147.4   n 17.2   –   114.9   n
Mean sample size per strain6.7   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 116.3524 116.3524 0.1562 0.6931
strain 16 238342.8933 14896.4308 19.9927 < 0.0001
sex:strain 16 14884.6339 930.2896 1.2486 0.2336
Residuals 209 155724.4167 745.0929


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 45.5 15.081   8 5.3318 0.3314 24.0, 62.0 -0.37
CC002/UncJ m 49.571 13.265   7 5.0136 0.2676 35.0, 76.0 -0.4
CC003/UncJ f 67.4 30.778   5 13.764 0.4567 38.0, 119.0 0.21
CC003/UncJ m 76.5 51.66   4 25.828 0.6752 1.0, 118.0 0.48
CC004/TauUncJ f 147.4 13.012   5 5.8189 0.0883 129.0, 159.0 2.33
CC004/TauUncJ m 106.4 10.028   8 3.5453 0.0943 91.0, 123.0 1.45
CC006/TauUncJ f 100.2 27.585   4 13.792 0.2752 68.0, 127.0 1.08
CC006/TauUncJ m 97.62 19.493   8 6.8919 0.1997 73.0, 125.0 1.17
CC009/UncJ f 27.75 12.959   8 4.5816 0.467 17.0, 53.0 -0.84
CC009/UncJ m 61.5 26.022   8 9.2002 0.4231 26.0, 111.0 -0.01
CC010/GeniUncJ f 2.0 2.0   4 1.0 1.0 1.0, 5.0 -1.52
CC013/GeniUncJ f 58.62 25.042   8 8.8538 0.4272 23.0, 95.0 -0.02
CC013/GeniUncJ m 77.75 39.836   4 19.918 0.5124 29.0, 124.0 0.52
CC017/UncJ f 57.67 40.707   6 16.619 0.7059 7.0, 103.0 -0.05
CC017/UncJ m 61.2 40.512   5 18.117 0.662 1.0, 107.0 -0.02
CC018/UncJ f 83.12 45.871   8 16.218 0.5518 20.0, 153.0 0.63
CC018/UncJ m 99.88 21.728   8 7.6822 0.2176 67.0, 134.0 1.24
CC019/TauUncJ f 42.375 21.534   8 7.6133 0.5082 5.0, 73.0 -0.45
CC019/TauUncJ m 42.75 18.398   8 6.5048 0.4304 19.0, 65.0 -0.62
CC024/GeniUncJ f 54.71 13.549   7 5.121 0.2476 29.0, 69.0 -0.12
CC024/GeniUncJ m 52.5 27.501   8 9.7229 0.5238 21.0, 99.0 -0.31
CC025/GeniUncJ f 37.333 31.992   6 13.061 0.8569 3.0, 74.0 -0.59
CC025/GeniUncJ m 30.6 19.608   10 6.2007 0.6408 3.0, 62.0 -1.02
CC026/GeniUncJ f 131.4 46.721   8 16.518 0.3556 41.0, 211.0 1.91
CC026/GeniUncJ m 114.9 55.18   8 19.509 0.4803 29.0, 178.0 1.73
CC032/GeniUncJ f 73.5 23.428   8 8.2829 0.3187 45.0, 120.0 0.37
CC032/GeniUncJ m 68.0 20.785   8 7.3485 0.3057 29.0, 93.0 0.2
CC040/TauUncJ f 58.25 15.881   8 5.6149 0.2726 35.0, 78.0 -0.03
CC040/TauUncJ m 52.86 22.252   7 8.4104 0.421 14.0, 81.0 -0.29
CC041/TauUncJ f 43.0 28.334   6 11.567 0.6589 7.0, 85.0 -0.44
CC041/TauUncJ m 23.875 26.595   8 9.4026 1.1139 1.0, 79.0 -1.24
CC051/TauUncJ f 20.375 17.079   8 6.0384 0.8382 1.0, 51.0 -1.04
CC051/TauUncJ m 17.2 22.871   10 7.2323 1.3297 1.0, 73.0 -1.46
CC068/TauUncJ f 18.8 11.323   5 5.0636 0.6023 9.0, 38.0 -1.08
CC068/TauUncJ m 18.5 16.895   8 5.9732 0.9132 3.0, 55.0 -1.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 45.5 9.6507 64.5253 26.4747
CC002/UncJ m 49.5714 10.3171 69.9103 29.2326
CC003/UncJ f 67.4 12.2073 91.4653 43.3347
CC003/UncJ m 76.5 13.6482 103.4058 49.5942
CC004/TauUncJ f 147.4 12.2073 171.4653 123.3347
CC004/TauUncJ m 106.375 9.6507 125.4003 87.3497
CC006/TauUncJ f 100.25 13.6482 127.1558 73.3442
CC006/TauUncJ m 97.625 9.6507 116.6503 78.5997
CC009/UncJ f 27.75 9.6507 46.7753 8.7247
CC009/UncJ m 61.5 9.6507 80.5253 42.4747
CC013/GeniUncJ f 58.625 9.6507 77.6503 39.5997
CC013/GeniUncJ m 77.75 13.6482 104.6558 50.8442
CC017/UncJ f 57.6667 11.1437 79.6351 35.6982
CC017/UncJ m 61.2 12.2073 85.2653 37.1347
CC018/UncJ f 83.125 9.6507 102.1503 64.0997
CC018/UncJ m 99.875 9.6507 118.9003 80.8497
CC019/TauUncJ f 42.375 9.6507 61.4003 23.3497
CC019/TauUncJ m 42.75 9.6507 61.7753 23.7247
CC024/GeniUncJ f 54.7143 10.3171 75.0531 34.3754
CC024/GeniUncJ m 52.5 9.6507 71.5253 33.4747
CC025/GeniUncJ f 37.3333 11.1437 59.3018 15.3649
CC025/GeniUncJ m 30.6 8.6319 47.6167 13.5833
CC026/GeniUncJ f 131.375 9.6507 150.4003 112.3497
CC026/GeniUncJ m 114.875 9.6507 133.9003 95.8497
CC032/GeniUncJ f 73.5 9.6507 92.5253 54.4747
CC032/GeniUncJ m 68.0 9.6507 87.0253 48.9747
CC040/TauUncJ f 58.25 9.6507 77.2753 39.2247
CC040/TauUncJ m 52.8571 10.3171 73.196 32.5183
CC041/TauUncJ f 43.0 11.1437 64.9685 21.0315
CC041/TauUncJ m 23.875 9.6507 42.9003 4.8497
CC051/TauUncJ f 20.375 9.6507 39.4003 1.3497
CC051/TauUncJ m 17.2 8.6319 34.2167 0.1833
CC068/TauUncJ f 18.8 12.2073 42.8653 -5.2653
CC068/TauUncJ m 18.5 9.6507 37.5253 -0.5253


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 47.5357 7.0636 61.4608 33.6107
CC003/UncJ both 71.95 9.1555 89.9989 53.9011
CC004/TauUncJ both 126.8875 7.7807 142.2261 111.5489
CC006/TauUncJ both 98.9375 8.3578 115.4139 82.4611
CC009/UncJ both 44.625 6.8241 58.0779 31.1721
CC013/GeniUncJ both 68.1875 8.3578 84.6639 51.7111
CC017/UncJ both 59.4333 8.2644 75.7256 43.1411
CC018/UncJ both 91.5 6.8241 104.9529 78.0471
CC019/TauUncJ both 42.5625 6.8241 56.0154 29.1096
CC024/GeniUncJ both 53.6071 7.0636 67.5322 39.6821
CC025/GeniUncJ both 33.9667 7.0479 47.8607 20.0726
CC026/GeniUncJ both 123.125 6.8241 136.5779 109.6721
CC032/GeniUncJ both 70.75 6.8241 84.2029 57.2971
CC040/TauUncJ both 55.5536 7.0636 69.4786 41.6285
CC041/TauUncJ both 33.4375 7.3709 47.9683 18.9067
CC051/TauUncJ both 18.7875 6.4739 31.55 6.025
CC068/TauUncJ both 18.65 7.7807 33.9886 3.3114




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA