Project measure / variable:   JaxCC1   pct_dark_LD

ID, description, units MPD:89092   pct_dark_LD   percentage of total time in dark zone, 20 min test   [%]  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 8-10wks
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  STRAIN COMPARISON PLOT
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JaxCC1 - percentage of total time in dark zone, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means80.45   % 78.98   %
Median of the strain means78.28   % 79.02   %
SD of the strain means± 10.235 ± 10.462
Coefficient of variation (CV)0.1272 0.1325
Min–max range of strain means63.65   –   99.84   % 58.01   –   96.68   %
Mean sample size per strain6.7   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.1869 2.1869 0.0182 0.8927
strain 16 22355.1084 1397.1943 11.6444 < 0.0001
sex:strain 16 1505.9967 94.1248 0.7845 0.7023
Residuals 209 25077.5465 119.9883


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 76.58 8.9303   8 3.1573 0.1166 66.1, 89.81 -0.38
CC002/UncJ m 78.27 10.921   7 4.1277 0.1395 61.27, 89.49 -0.07
CC003/UncJ f 79.44 12.584   5 5.6279 0.1584 59.89, 91.98 -0.1
CC003/UncJ m 79.02 18.262   4 9.1309 0.2311 60.6, 100.0 0.0
CC004/TauUncJ f 63.65 6.816   5 3.0482 0.1071 54.41, 71.01 -1.64
CC004/TauUncJ m 58.01 9.4085   8 3.3264 0.1622 45.66, 72.85 -2.0
CC006/TauUncJ f 74.38 7.9864   4 3.9932 0.1074 65.1, 81.81 -0.59
CC006/TauUncJ m 76.11 10.176   8 3.5976 0.1337 61.06, 90.61 -0.27
CC009/UncJ f 93.69 1.4236   8 0.50331 0.0152 90.84, 95.68 1.29
CC009/UncJ m 86.62 9.9019   8 3.5009 0.1143 65.67, 96.78 0.73
CC010/GeniUncJ f 99.84 0.31   4 0.155 0.0031 99.38, 100.0 1.89
CC013/GeniUncJ f 71.15 11.806   8 4.1741 0.1659 56.09, 95.97 -0.91
CC013/GeniUncJ m 75.18 12.237   4 6.1184 0.1628 65.76, 92.95 -0.36
CC017/UncJ f 86.9 10.292   6 4.2018 0.1184 74.96, 99.09 0.63
CC017/UncJ m 83.45 17.389   5 7.7765 0.2084 55.61, 100.0 0.43
CC018/UncJ f 73.52 11.405   8 4.0323 0.1551 60.75, 93.91 -0.68
CC018/UncJ m 64.27 5.782   8 2.0442 0.09 56.02, 71.57 -1.41
CC019/TauUncJ f 76.27 13.478   8 4.7653 0.1767 58.2, 99.24 -0.41
CC019/TauUncJ m 80.98 7.1275   8 2.5199 0.088 71.11, 93.83 0.19
CC024/GeniUncJ f 86.0 3.941   7 1.4896 0.0458 81.48, 90.86 0.54
CC024/GeniUncJ m 89.68 11.491   8 4.0627 0.1281 64.72, 98.92 1.02
CC025/GeniUncJ f 87.17 10.142   6 4.1406 0.1164 76.0, 99.97 0.66
CC025/GeniUncJ m 80.61 25.893   10 8.188 0.3212 18.1, 99.97 0.16
CC026/GeniUncJ f 77.13 9.9137   8 3.505 0.1285 62.78, 95.16 -0.32
CC026/GeniUncJ m 74.52 11.271   8 3.9847 0.1512 61.91, 91.33 -0.43
CC032/GeniUncJ f 66.12 9.292   8 3.2852 0.1405 49.31, 76.72 -1.4
CC032/GeniUncJ m 71.58 11.38   8 4.0235 0.159 54.32, 90.86 -0.71
CC040/TauUncJ f 69.55 10.119   8 3.5776 0.1455 56.23, 85.8 -1.07
CC040/TauUncJ m 65.34 11.276   7 4.262 0.1726 49.03, 80.38 -1.3
CC041/TauUncJ f 82.12 8.1436   6 3.3246 0.0992 69.96, 89.85 0.16
CC041/TauUncJ m 90.32 5.9008   8 2.0862 0.0653 80.97, 100.0 1.08
CC051/TauUncJ f 94.03 5.8651   8 2.0736 0.0624 84.87, 100.0 1.33
CC051/TauUncJ m 96.68 5.3419   10 1.6893 0.0553 83.34, 100.0 1.69
CC068/TauUncJ f 90.57 7.4924   5 3.3507 0.0827 81.39, 99.91 0.99
CC068/TauUncJ m 92.01 7.3759   8 2.6078 0.0802 76.62, 99.98 1.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 76.5762 3.8728 84.211 68.9415
CC002/UncJ m 78.2714 4.1402 86.4333 70.1095
CC003/UncJ f 79.436 4.8987 89.0933 69.7787
CC003/UncJ m 79.0225 5.477 89.8197 68.2253
CC004/TauUncJ f 63.652 4.8987 73.3093 53.9947
CC004/TauUncJ m 58.0062 3.8728 65.641 50.3715
CC006/TauUncJ f 74.38 5.477 85.1772 63.5828
CC006/TauUncJ m 76.105 3.8728 83.7397 68.4703
CC009/UncJ f 93.6875 3.8728 101.3222 86.0528
CC009/UncJ m 86.6212 3.8728 94.256 78.9865
CC013/GeniUncJ f 71.1462 3.8728 78.781 63.5115
CC013/GeniUncJ m 75.1775 5.477 85.9747 64.3803
CC017/UncJ f 86.9 4.4719 95.7158 78.0842
CC017/UncJ m 83.45 4.8987 93.1073 73.7927
CC018/UncJ f 73.5225 3.8728 81.1572 65.8878
CC018/UncJ m 64.2675 3.8728 71.9022 56.6328
CC019/TauUncJ f 76.2662 3.8728 83.901 68.6315
CC019/TauUncJ m 80.9775 3.8728 88.6122 73.3428
CC024/GeniUncJ f 86.0043 4.1402 94.1662 77.8424
CC024/GeniUncJ m 89.6762 3.8728 97.311 82.0415
CC025/GeniUncJ f 87.1683 4.4719 95.9842 78.3525
CC025/GeniUncJ m 80.611 3.4639 87.4397 73.7823
CC026/GeniUncJ f 77.1337 3.8728 84.7685 69.499
CC026/GeniUncJ m 74.5212 3.8728 82.156 66.8865
CC032/GeniUncJ f 66.125 3.8728 73.7597 58.4903
CC032/GeniUncJ m 71.575 3.8728 79.2097 63.9403
CC040/TauUncJ f 69.5475 3.8728 77.1822 61.9128
CC040/TauUncJ m 65.3414 4.1402 73.5033 57.1795
CC041/TauUncJ f 82.125 4.4719 90.9408 73.3092
CC041/TauUncJ m 90.315 3.8728 97.9497 82.6803
CC051/TauUncJ f 94.0312 3.8728 101.666 86.3965
CC051/TauUncJ m 96.679 3.4639 103.5077 89.8503
CC068/TauUncJ f 90.572 4.8987 100.2293 80.9147
CC068/TauUncJ m 92.0075 3.8728 99.6422 84.3728


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 77.4238 2.8346 83.0119 71.8358
CC003/UncJ both 79.2292 3.6741 86.4722 71.9863
CC004/TauUncJ both 60.8291 3.1223 66.9845 54.6738
CC006/TauUncJ both 75.2425 3.3539 81.8544 68.6306
CC009/UncJ both 90.1544 2.7385 95.553 84.7558
CC013/GeniUncJ both 73.1619 3.3539 79.7738 66.55
CC017/UncJ both 85.175 3.3165 91.713 78.637
CC018/UncJ both 68.895 2.7385 74.2936 63.4964
CC019/TauUncJ both 78.6219 2.7385 84.0205 73.2233
CC024/GeniUncJ both 87.8403 2.8346 93.4283 82.2522
CC025/GeniUncJ both 83.8897 2.8283 89.4653 78.314
CC026/GeniUncJ both 75.8275 2.7385 81.2261 70.4289
CC032/GeniUncJ both 68.85 2.7385 74.2486 63.4514
CC040/TauUncJ both 67.4445 2.8346 73.0325 61.8564
CC041/TauUncJ both 86.22 2.9579 92.0511 80.3889
CC051/TauUncJ both 95.3551 2.5979 100.4767 90.2336
CC068/TauUncJ both 91.2897 3.1223 97.4451 85.1344




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA