Phenotype measure:   JaxCC1   pct_light_LD

ID, description, units MPD:89091   pct_light_LD   percentage of total time in light zone, 20 min test   [%]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 8-10wks
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JaxCC1 - percentage of total time in light zone, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means22.383   % 21.842   %
Median of the strain means23.145   % 21.729   %
SD of the strain means± 11.335 ± 10.278
Coefficient of variation (CV)0.5064 0.4706
Min–max range of strain means6.3125   –   50.31   % 4.7443   –   41.994   %
Mean sample size per strain6.5   mice 7.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 24.9458 24.9458 0.2104 0.647
strain 16 20306.5377 1269.1586 10.7029 < 0.0001
sex:strain 16 1572.8928 98.3058 0.829 0.6517
Residuals 202 23953.2458 118.5804


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 23.424 8.9303   8 3.1573 0.3812 10.19, 33.9 0.09
CC002/UncJ m 21.729 10.921   7 4.1277 0.5026 10.51, 38.73 -0.01
CC003/UncJ f 20.564 12.584   5 5.6279 0.612 8.02, 40.11 -0.16
CC003/UncJ m 27.97 14.383   3 8.3041 0.5142 11.82, 39.4 0.6
CC004/TauUncJ f 36.348 6.816   5 3.0482 0.1875 28.99, 45.59 1.23
CC004/TauUncJ m 41.994 9.4085   8 3.3264 0.224 27.15, 54.34 1.96
CC006/TauUncJ f 25.62 7.9864   4 3.9932 0.3117 18.19, 34.9 0.29
CC006/TauUncJ m 23.895 10.176   8 3.5976 0.4258 9.39, 38.94 0.2
CC009/UncJ f 6.3125 1.4236   8 0.50331 0.2255 4.32, 9.16 -1.42
CC009/UncJ m 13.379 9.9019   8 3.5009 0.7401 3.22, 34.33 -0.82
CC010/GeniUncJ f 50.31 70.27   2   49.69 1.3968 0.62, 100.0 2.46
CC013/GeniUncJ f 28.854 11.806   8 4.1741 0.4092 4.03, 43.91 0.57
CC013/GeniUncJ m 24.822 12.237   4 6.1184 0.493 7.05, 34.24 0.29
CC017/UncJ f 13.1 10.292   6 4.2018 0.7857 0.91, 25.04 -0.82
CC017/UncJ m 20.688 17.001   4 8.5005 0.8218 5.97, 44.39 -0.11
CC018/UncJ f 26.478 11.405   8 4.0323 0.4307 6.09, 39.25 0.36
CC018/UncJ m 35.733 5.782   8 2.0442 0.1618 28.43, 43.98 1.35
CC019/TauUncJ f 23.734 13.478   8 4.7653 0.5679 0.76, 41.8 0.12
CC019/TauUncJ m 19.022 7.1275   8 2.5199 0.3747 6.17, 28.89 -0.27
CC024/GeniUncJ f 13.996 3.941   7 1.4896 0.2816 9.14, 18.52 -0.74
CC024/GeniUncJ m 10.324 11.491   8 4.0627 1.1131 1.08, 35.28 -1.12
CC025/GeniUncJ f 12.832 10.142   6 4.1406 0.7904 0.03, 24.0 -0.84
CC025/GeniUncJ m 19.389 25.893   10 8.188 1.3354 0.03, 81.9 -0.24
CC026/GeniUncJ f 22.866 9.9137   8 3.505 0.4336 4.84, 37.22 0.04
CC026/GeniUncJ m 25.479 11.271   8 3.9847 0.4423 8.67, 38.09 0.35
CC032/GeniUncJ f 33.875 9.292   8 3.2852 0.2743 23.28, 50.69 1.01
CC032/GeniUncJ m 28.425 11.38   8 4.0235 0.4004 9.14, 45.68 0.64
CC040/TauUncJ f 30.453 10.119   8 3.5776 0.3323 14.2, 43.77 0.71
CC040/TauUncJ m 34.659 11.276   7 4.262 0.3254 19.62, 50.97 1.25
CC041/TauUncJ f 17.875 8.1436   6 3.3246 0.4556 10.15, 30.04 -0.4
CC041/TauUncJ m 11.069 4.7703   7 1.803 0.431 3.89, 19.03 -1.05
CC051/TauUncJ f 6.8214 5.7746   7 2.1826 0.8465 0.01, 15.13 -1.37
CC051/TauUncJ m 4.7443 5.9098   7 2.2337 1.2457 0.15, 16.66 -1.66
CC068/TauUncJ f 9.428 7.4924   5 3.3507 0.7947 0.09, 18.61 -1.14
CC068/TauUncJ m 7.9925 7.3759   8 2.6078 0.9229 0.02, 23.38 -1.35


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 23.4238 3.85 31.0151 15.8324
CC002/UncJ m 21.7286 4.1158 29.8441 13.6131
CC003/UncJ f 20.564 4.8699 30.1664 10.9616
CC003/UncJ m 27.97 6.287 40.3666 15.5734
CC004/TauUncJ f 36.348 4.8699 45.9504 26.7456
CC004/TauUncJ m 41.9938 3.85 49.5851 34.4024
CC006/TauUncJ f 25.62 5.4447 36.3558 14.8842
CC006/TauUncJ m 23.895 3.85 31.4864 16.3036
CC009/UncJ f 6.3125 3.85 13.9039 -1.2789
CC009/UncJ m 13.3788 3.85 20.9701 5.7874
CC013/GeniUncJ f 28.8538 3.85 36.4451 21.2624
CC013/GeniUncJ m 24.8225 5.4447 35.5583 14.0867
CC017/UncJ f 13.1 4.4456 21.8657 4.3343
CC017/UncJ m 20.6875 5.4447 31.4233 9.9517
CC018/UncJ f 26.4775 3.85 34.0689 18.8861
CC018/UncJ m 35.7325 3.85 43.3239 28.1411
CC019/TauUncJ f 23.7338 3.85 31.3251 16.1424
CC019/TauUncJ m 19.0225 3.85 26.6139 11.4311
CC024/GeniUncJ f 13.9957 4.1158 22.1112 5.8802
CC024/GeniUncJ m 10.3238 3.85 17.9151 2.7324
CC025/GeniUncJ f 12.8317 4.4456 21.5974 4.0659
CC025/GeniUncJ m 19.389 3.4436 26.1789 12.5991
CC026/GeniUncJ f 22.8663 3.85 30.4576 15.2749
CC026/GeniUncJ m 25.4788 3.85 33.0701 17.8874
CC032/GeniUncJ f 33.875 3.85 41.4664 26.2836
CC032/GeniUncJ m 28.425 3.85 36.0164 20.8336
CC040/TauUncJ f 30.4525 3.85 38.0439 22.8611
CC040/TauUncJ m 34.6586 4.1158 42.7741 26.5431
CC041/TauUncJ f 17.875 4.4456 26.6407 9.1093
CC041/TauUncJ m 11.0686 4.1158 19.1841 2.9531
CC051/TauUncJ f 6.8214 4.1158 14.9369 -1.2941
CC051/TauUncJ m 4.7443 4.1158 12.8598 -3.3712
CC068/TauUncJ f 9.428 4.8699 19.0304 -0.1744
CC068/TauUncJ m 7.9925 3.85 15.5839 0.4011


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 22.5762 2.8179 28.1325 17.0199
CC003/UncJ both 24.267 3.9763 32.1073 16.4267
CC004/TauUncJ both 39.1709 3.104 45.2912 33.0505
CC006/TauUncJ both 24.7575 3.3342 31.3318 18.1832
CC009/UncJ both 9.8456 2.7224 15.2135 4.4777
CC013/GeniUncJ both 26.8381 3.3342 33.4124 20.2638
CC017/UncJ both 16.8938 3.5146 23.8237 9.9638
CC018/UncJ both 31.105 2.7224 36.4729 25.7371
CC019/TauUncJ both 21.3781 2.7224 26.746 16.0102
CC024/GeniUncJ both 12.1597 2.8179 17.716 6.6034
CC025/GeniUncJ both 16.1103 2.8116 21.6543 10.5664
CC026/GeniUncJ both 24.1725 2.7224 29.5404 18.8046
CC032/GeniUncJ both 31.15 2.7224 36.5179 25.7821
CC040/TauUncJ both 32.5555 2.8179 38.1118 26.9992
CC041/TauUncJ both 14.4718 3.0292 20.4446 8.4989
CC051/TauUncJ both 5.7829 2.9103 11.5214 0.0443
CC068/TauUncJ both 8.7103 3.104 14.8306 2.5899




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CKB, or AXBBXA