Phenotype measure:   JaxCC1   dark_dur_LD


  STRAIN COMPARISON PLOT
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JaxCC1 - time spent in dark zone, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means844.5   s 828.1   s
Median of the strain means875.6   s 824.4   s
SD of the strain means± 78.7 ± 101.1
Coefficient of variation (CV)0.0932 0.1221
Min–max range of strain means703.8   –   969.6   s 641.0   –   976.9   s
Mean sample size per strain6.7   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 8985.3755 8985.3755 0.31 0.5782
strain 16 1569989.1565 98124.3223 3.3858 < 0.0001
sex:strain 16 334744.3763 20921.5235 0.7219 0.77
Residuals 209 6057042.9587 28981.0668


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 876.5 129.4   8 45.756 0.1477 696.2, 1063.0 0.41
CC002/UncJ m 881.1 184.9   7 69.88 0.2098 605.0, 1056.0 0.52
CC003/UncJ f 902.4 131.5   5 58.82 0.1458 702.5, 1056.0 0.74
CC003/UncJ m 916.1 181.4   4 90.69 0.198 724.8, 1088.0 0.87
CC004/TauUncJ f 736.7 75.35   5 33.698 0.1023 649.4, 851.1 -1.37
CC004/TauUncJ m 668.9 114.2   8 40.369 0.1707 546.1, 872.5 -1.57
CC006/TauUncJ f 878.6 87.26   4 43.631 0.0993 776.6, 958.6 0.43
CC006/TauUncJ m 891.1 107.3   8 37.941 0.1204 723.8, 1024.0 0.62
CC009/UncJ f 897.7 66.49   8 23.506 0.0741 804.9, 968.1 0.68
CC009/UncJ m 976.9 106.3   8 37.587 0.1088 765.6, 1112.0 1.47
CC010/GeniUncJ f 969.6 195.1   4 97.53 0.2012 764.1, 1174.0 1.59
CC013/GeniUncJ f 754.9 102.9   8 36.384 0.1363 601.2, 881.8 -1.14
CC013/GeniUncJ m 758.3 104.9   4 52.46 0.1384 651.3, 871.7 -0.69
CC017/UncJ f 914.2 123.3   6 50.33 0.1348 711.0, 1056.0 0.89
CC017/UncJ m 930.1 222.8   5 99.66 0.2396 599.9, 1199.0 1.01
CC018/UncJ f 854.3 134.3   8 47.495 0.1572 687.0, 1123.0 0.12
CC018/UncJ m 758.6 74.93   8 26.491 0.0988 660.8, 851.4 -0.69
CC019/TauUncJ f 777.6 149.1   8 52.73 0.1918 578.7, 986.7 -0.85
CC019/TauUncJ m 824.4 134.1   8 47.406 0.1627 551.5, 934.4 -0.04
CC024/GeniUncJ f 909.5 91.09   7 34.43 0.1002 777.6, 1017.0 0.83
CC024/GeniUncJ m 942.6 189.0   8 66.84 0.2006 715.4, 1184.0 1.13
CC025/GeniUncJ f 811.9 230.7   6 94.19 0.2842 377.9, 1022.0 -0.41
CC025/GeniUncJ m 641.0 354.0   10 111.9 0.5523 192.2, 1055.0 -1.85
CC026/GeniUncJ f 911.5 126.6   8 44.743 0.1388 741.2, 1141.0 0.85
CC026/GeniUncJ m 876.8 116.9   8 41.34 0.1334 740.0, 1059.0 0.48
CC032/GeniUncJ f 725.7 101.5   8 35.885 0.1399 562.8, 862.6 -1.51
CC032/GeniUncJ m 807.6 137.5   8 48.597 0.1702 619.8, 1053.0 -0.2
CC040/TauUncJ f 789.2 150.7   8 53.29 0.191 535.7, 999.6 -0.7
CC040/TauUncJ m 717.8 124.1   7 46.904 0.1729 513.2, 876.8 -1.09
CC041/TauUncJ f 703.8 309.5   6 126.3 0.4397 81.9, 900.8 -1.79
CC041/TauUncJ m 805.4 282.0   8 99.71 0.3502 362.9, 1134.0 -0.22
CC051/TauUncJ f 911.8 178.5   8 63.1 0.1957 631.2, 1138.0 0.86
CC051/TauUncJ m 934.0 241.8   10 76.45 0.2588 305.1, 1177.0 1.05
CC068/TauUncJ f 874.8 79.01   5 35.334 0.0903 810.3, 1010.0 0.39
CC068/TauUncJ m 746.2 186.4   8 65.9 0.2498 463.7, 919.7 -0.81


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 876.4625 60.1883 995.1165 757.8085
CC002/UncJ m 881.1143 64.344 1007.9608 754.2678
CC003/UncJ f 902.4 76.1329 1052.4868 752.3132
CC003/UncJ m 916.1 85.1191 1083.9021 748.2979
CC004/TauUncJ f 736.68 76.1329 886.7668 586.5932
CC004/TauUncJ m 668.8875 60.1883 787.5415 550.2335
CC006/TauUncJ f 878.575 85.1191 1046.3771 710.7729
CC006/TauUncJ m 891.0875 60.1883 1009.7415 772.4335
CC009/UncJ f 897.725 60.1883 1016.379 779.071
CC009/UncJ m 976.9125 60.1883 1095.5665 858.2585
CC013/GeniUncJ f 754.925 60.1883 873.579 636.271
CC013/GeniUncJ m 758.325 85.1191 926.1271 590.5229
CC017/UncJ f 914.1667 69.4995 1051.1765 777.1568
CC017/UncJ m 930.14 76.1329 1080.2268 780.0532
CC018/UncJ f 854.325 60.1883 972.979 735.671
CC018/UncJ m 758.65 60.1883 877.304 639.996
CC019/TauUncJ f 777.65 60.1883 896.304 658.996
CC019/TauUncJ m 824.3625 60.1883 943.0165 705.7085
CC024/GeniUncJ f 909.5429 64.344 1036.3893 782.6964
CC024/GeniUncJ m 942.625 60.1883 1061.279 823.971
CC025/GeniUncJ f 811.8833 69.4995 948.8932 674.8735
CC025/GeniUncJ m 640.95 53.8341 747.0774 534.8226
CC026/GeniUncJ f 911.45 60.1883 1030.104 792.796
CC026/GeniUncJ m 876.7625 60.1883 995.4165 758.1085
CC032/GeniUncJ f 725.675 60.1883 844.329 607.021
CC032/GeniUncJ m 807.55 60.1883 926.204 688.896
CC040/TauUncJ f 789.2125 60.1883 907.8665 670.5585
CC040/TauUncJ m 717.7857 64.344 844.6322 590.9392
CC041/TauUncJ f 703.85 69.4995 840.8598 566.8402
CC041/TauUncJ m 805.3875 60.1883 924.0415 686.7335
CC051/TauUncJ f 911.8125 60.1883 1030.4665 793.1585
CC051/TauUncJ m 934.03 53.8341 1040.1574 827.9026
CC068/TauUncJ f 874.78 76.1329 1024.8668 724.6932
CC068/TauUncJ m 746.225 60.1883 864.879 627.571


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 878.7884 44.0533 965.6342 791.9426
CC003/UncJ both 909.25 57.0996 1021.8151 796.6849
CC004/TauUncJ both 702.7837 48.5254 798.4457 607.1218
CC006/TauUncJ both 884.8312 52.1246 987.5886 782.0739
CC009/UncJ both 937.3188 42.5596 1021.2198 853.4177
CC013/GeniUncJ both 756.625 52.1246 859.3824 653.8676
CC017/UncJ both 922.1533 51.5422 1023.7626 820.5441
CC018/UncJ both 806.4875 42.5596 890.3886 722.5864
CC019/TauUncJ both 801.0062 42.5596 884.9073 717.1052
CC024/GeniUncJ both 926.0839 44.0533 1012.9298 839.2381
CC025/GeniUncJ both 726.4167 43.9553 813.0693 639.764
CC026/GeniUncJ both 894.1062 42.5596 978.0073 810.2052
CC032/GeniUncJ both 766.6125 42.5596 850.5136 682.7114
CC040/TauUncJ both 753.4991 44.0533 840.3449 666.6533
CC041/TauUncJ both 754.6188 45.9696 845.2422 663.9953
CC051/TauUncJ both 922.9212 40.3755 1002.5168 843.3257
CC068/TauUncJ both 810.5025 48.5254 906.1644 714.8406




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA