Phenotype measure:   JaxCC1   dark_mobile_LD


  STRAIN COMPARISON PLOT
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JaxCC1 - time mobile in dark zone, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means182.6   s 176.3   s
Median of the strain means174.7   s 173.8   s
SD of the strain means± 55.3 ± 48.78
Coefficient of variation (CV)0.3029 0.2766
Min–max range of strain means103.7   –   318.2   s 87.97   –   264.0   s
Mean sample size per strain6.7   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 13443.8269 13443.8269 7.5966 0.0064
strain 16 554471.7819 34654.4864 19.5821 < 0.0001
sex:strain 16 49740.7715 3108.7982 1.7567 0.0389
Residuals 209 369868.567 1769.7061


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 171.8 14.504   8 5.1281 0.0845 149.8, 199.4 -0.2
CC002/UncJ m 173.8 29.41   7 11.116 0.1692 126.4, 202.5 -0.05
CC003/UncJ f 232.2 48.567   5 21.72 0.2092 188.5, 297.1 0.9
CC003/UncJ m 251.8 31.864   4 15.932 0.1265 228.9, 297.8 1.55
CC004/TauUncJ f 274.6 20.534   5 9.1829 0.0748 241.8, 288.7 1.66
CC004/TauUncJ m 217.2 21.727   8 7.6816 0.1001 202.0, 265.3 0.84
CC006/TauUncJ f 192.8 44.914   4 22.457 0.2329 152.2, 257.0 0.18
CC006/TauUncJ m 178.5 11.072   8 3.9145 0.062 164.4, 192.7 0.04
CC009/UncJ f 176.9 23.748   8 8.396 0.1342 136.6, 204.4 -0.1
CC009/UncJ m 200.9 34.862   8 12.325 0.1735 140.4, 239.9 0.5
CC010/GeniUncJ f 103.7 30.327   4 15.163 0.2924 66.2, 133.6 -1.43
CC013/GeniUncJ f 142.4 32.2   8 11.384 0.2261 99.9, 178.5 -0.73
CC013/GeniUncJ m 212.2 45.901   4 22.95 0.2163 161.7, 272.8 0.74
CC017/UncJ f 184.7 46.448   6 18.962 0.2514 118.4, 236.3 0.04
CC017/UncJ m 157.9 19.702   5 8.8109 0.1248 133.6, 174.9 -0.38
CC018/UncJ f 240.8 40.943   8 14.476 0.17 153.7, 275.7 1.05
CC018/UncJ m 229.5 35.417   8 12.522 0.1543 184.9, 291.9 1.09
CC019/TauUncJ f 156.9 46.553   8 16.459 0.2967 69.5, 215.4 -0.46
CC019/TauUncJ m 176.6 117.5   8 41.551 0.6655 103.0, 461.5 0.01
CC024/GeniUncJ f 154.4 33.288   7 12.582 0.2157 125.0, 221.0 -0.51
CC024/GeniUncJ m 133.6 34.81   8 12.307 0.2606 98.6, 183.3 -0.88
CC025/GeniUncJ f 137.7 40.48   6 16.526 0.2939 64.5, 176.1 -0.81
CC025/GeniUncJ m 104.4 50.94   10 16.108 0.4879 26.7, 164.1 -1.47
CC026/GeniUncJ f 318.2 25.452   8 8.9985 0.08 271.3, 345.7 2.45
CC026/GeniUncJ m 264.0 12.691   8 4.4869 0.0481 244.9, 278.8 1.8
CC032/GeniUncJ f 184.5 42.313   8 14.96 0.2294 131.8, 254.2 0.03
CC032/GeniUncJ m 164.0 27.398   8 9.6867 0.167 130.5, 203.9 -0.25
CC040/TauUncJ f 197.9 28.413   8 10.046 0.1436 146.4, 235.4 0.28
CC040/TauUncJ m 166.2 36.193   7 13.68 0.2178 109.9, 220.6 -0.21
CC041/TauUncJ f 115.6 53.2   6 21.721 0.4604 21.2, 165.0 -1.21
CC041/TauUncJ m 87.97 35.943   8 12.708 0.4086 53.0, 169.5 -1.81
CC051/TauUncJ f 128.9 48.213   8 17.046 0.374 76.1, 217.3 -0.97
CC051/TauUncJ m 129.8 46.808   10 14.802 0.3606 41.2, 215.3 -0.95
CC068/TauUncJ f 172.5 42.37   5 18.948 0.2457 121.9, 232.3 -0.18
CC068/TauUncJ m 149.4 50.82   8 17.966 0.34 97.3, 248.1 -0.55


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 171.75 14.8732 201.0708 142.4292
CC002/UncJ m 173.8286 15.9002 205.1738 142.4833
CC003/UncJ f 232.18 18.8133 269.2682 195.0918
CC003/UncJ m 251.825 21.0339 293.2909 210.3591
CC004/TauUncJ f 274.56 18.8133 311.6482 237.4718
CC004/TauUncJ m 217.15 14.8732 246.4708 187.8292
CC006/TauUncJ f 192.85 21.0339 234.3159 151.3841
CC006/TauUncJ m 178.525 14.8732 207.8458 149.2042
CC009/UncJ f 176.925 14.8732 206.2458 147.6042
CC009/UncJ m 200.8875 14.8732 230.2083 171.5667
CC013/GeniUncJ f 142.425 14.8732 171.7458 113.1042
CC013/GeniUncJ m 212.25 21.0339 253.7159 170.7841
CC017/UncJ f 184.7333 17.1741 218.5901 150.8766
CC017/UncJ m 157.86 18.8133 194.9482 120.7718
CC018/UncJ f 240.7875 14.8732 270.1083 211.4667
CC018/UncJ m 229.5125 14.8732 258.8333 200.1917
CC019/TauUncJ f 156.9125 14.8732 186.2333 127.5917
CC019/TauUncJ m 176.5875 14.8732 205.9083 147.2667
CC024/GeniUncJ f 154.3571 15.9002 185.7024 123.0119
CC024/GeniUncJ m 133.5875 14.8732 162.9083 104.2667
CC025/GeniUncJ f 137.7333 17.1741 171.5901 103.8766
CC025/GeniUncJ m 104.41 13.303 130.6353 78.1847
CC026/GeniUncJ f 318.1625 14.8732 347.4833 288.8417
CC026/GeniUncJ m 264.0375 14.8732 293.3583 234.7167
CC032/GeniUncJ f 184.4875 14.8732 213.8083 155.1667
CC032/GeniUncJ m 164.025 14.8732 193.3458 134.7042
CC040/TauUncJ f 197.9125 14.8732 227.2333 168.5917
CC040/TauUncJ m 166.1857 15.9002 197.531 134.8405
CC041/TauUncJ f 115.5667 17.1741 149.4234 81.7099
CC041/TauUncJ m 87.975 14.8732 117.2958 58.6542
CC051/TauUncJ f 128.925 14.8732 158.2458 99.6042
CC051/TauUncJ m 129.79 13.303 156.0153 103.5647
CC068/TauUncJ f 172.46 18.8133 209.5482 135.3718
CC068/TauUncJ m 149.45 14.8732 178.7708 120.1292


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 172.7893 10.8861 194.2499 151.3287
CC003/UncJ both 242.0025 14.11 269.8187 214.1863
CC004/TauUncJ both 245.855 11.9912 269.4942 222.2158
CC006/TauUncJ both 185.6875 12.8806 211.0801 160.2949
CC009/UncJ both 188.9062 10.517 209.6392 168.1733
CC013/GeniUncJ both 177.3375 12.8806 202.7301 151.9449
CC017/UncJ both 171.2967 12.7367 196.4055 146.1878
CC018/UncJ both 235.15 10.517 255.8829 214.4171
CC019/TauUncJ both 166.75 10.517 187.4829 146.0171
CC024/GeniUncJ both 143.9723 10.8861 165.4329 122.5117
CC025/GeniUncJ both 121.0717 10.8619 142.4846 99.6588
CC026/GeniUncJ both 291.1 10.517 311.8329 270.3671
CC032/GeniUncJ both 174.2562 10.517 194.9892 153.5233
CC040/TauUncJ both 182.0491 10.8861 203.5097 160.5885
CC041/TauUncJ both 101.7708 11.3596 124.165 79.3767
CC051/TauUncJ both 129.3575 9.9773 149.0265 109.6885
CC068/TauUncJ both 160.955 11.9912 184.5942 137.3158




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CKB, or AXBBXA