Project measure / variable:   JaxCC1   light_mobile_LD

ID, description, units MPD:89087   light_mobile_LD   time mobile in light zone, 20 min test   [s]  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 8-10wks
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  STRAIN COMPARISON PLOT
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JaxCC1 - time mobile in light zone, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means81.2   s 87.91   s
Median of the strain means81.96   s 83.7   s
SD of the strain means± 51.12 ± 45.204
Coefficient of variation (CV)0.6295 0.5142
Min–max range of strain means6.32   –   201.0   s 23.94   –   178.5   s
Mean sample size per strain6.8   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.8092 0.8092 0.0005 0.9824
strain 16 489248.8241 30578.0515 18.4551 < 0.0001
sex:strain 16 24686.5092 1542.9068 0.9312 0.5343
Residuals 211 349604.3111 1656.8925


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 84.04 30.002   8 10.607 0.357 29.8, 123.3 0.06
CC002/UncJ m 80.2 24.686   7 9.3304 0.3078 54.5, 118.4 -0.17
CC003/UncJ f 105.0 77.27   5 34.556 0.7356 40.2, 232.4 0.47
CC003/UncJ m 121.9 99.71   4 49.853 0.8176 11.4, 220.8 0.75
CC004/TauUncJ f 201.0 27.576   5 12.332 0.1372 175.2, 238.5 2.34
CC004/TauUncJ m 178.5 41.421   8 14.645 0.232 106.1, 219.6 2.0
CC006/TauUncJ f 92.28 20.252   4 10.126 0.2195 69.5, 113.1 0.22
CC006/TauUncJ m 91.74 44.523   8 15.741 0.4853 30.9, 172.3 0.08
CC009/UncJ f 28.788 10.43   8 3.6876 0.3623 14.5, 44.7 -1.03
CC009/UncJ m 59.05 35.368   8 12.504 0.5989 25.4, 133.9 -0.64
CC010/GeniUncJ f 6.32 6.6541   5 2.9758 1.0529 0.6, 15.8 -1.46
CC013/GeniUncJ f 79.88 31.176   8 11.022 0.3903 28.0, 117.5 -0.03
CC013/GeniUncJ m 105.4 49.088   4 24.544 0.4659 34.5, 142.3 0.39
CC017/UncJ f 62.78 41.011   6 16.743 0.6532 3.6, 110.9 -0.36
CC017/UncJ m 65.2 46.175   5 20.65 0.7082 0.8, 124.2 -0.5
CC018/UncJ f 126.9 59.47   8 21.024 0.4686 20.9, 186.6 0.89
CC018/UncJ m 164.5 48.036   8 16.983 0.2921 87.3, 248.2 1.69
CC019/TauUncJ f 85.39 49.94   8 17.656 0.5849 1.7, 177.0 0.08
CC019/TauUncJ m 83.7 46.696   8 16.509 0.5579 28.6, 174.7 -0.09
CC024/GeniUncJ f 31.943 8.743   7 3.3045 0.2737 19.0, 44.2 -0.96
CC024/GeniUncJ m 36.938 43.914   8 15.526 1.1889 6.9, 138.1 -1.13
CC025/GeniUncJ f 36.95 18.239   6 7.4462 0.4936 13.5, 63.2 -0.87
CC025/GeniUncJ m 47.03 39.363   10 12.448 0.837 15.7, 124.0 -0.9
CC026/GeniUncJ f 139.3 58.65   8 20.735 0.4211 30.3, 226.0 1.14
CC026/GeniUncJ m 121.0 54.71   8 19.341 0.452 41.4, 176.3 0.73
CC032/GeniUncJ f 149.2 49.794   8 17.605 0.3337 81.5, 225.0 1.33
CC032/GeniUncJ m 116.3 34.432   8 12.174 0.2961 54.0, 171.5 0.63
CC040/TauUncJ f 109.8 26.348   8 9.3153 0.24 64.6, 151.7 0.56
CC040/TauUncJ m 115.6 38.924   7 14.712 0.3368 70.1, 180.7 0.61
CC041/TauUncJ f 57.44 35.895   8 12.691 0.6249 11.3, 109.0 -0.46
CC041/TauUncJ m 27.1 19.223   8 6.7964 0.7093 2.4, 48.6 -1.35
CC051/TauUncJ f 29.525 14.771   8 5.2225 0.5003 11.8, 54.2 -1.01
CC051/TauUncJ m 23.94 11.066   10 3.4995 0.4623 3.8, 37.3 -1.42
CC068/TauUncJ f 35.04 18.303   5 8.1854 0.5223 17.1, 60.4 -0.9
CC068/TauUncJ m 56.4 41.224   8 14.575 0.7309 22.9, 143.3 -0.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 84.0375 14.3914 112.4068 55.6682
CC002/UncJ m 80.2 15.385 110.528 49.872
CC003/UncJ f 105.04 18.2038 140.9246 69.1554
CC003/UncJ m 121.95 20.3525 162.0702 81.8298
CC004/TauUncJ f 200.96 18.2038 236.8446 165.0754
CC004/TauUncJ m 178.525 14.3914 206.8943 150.1557
CC006/TauUncJ f 92.275 20.3525 132.3952 52.1548
CC006/TauUncJ m 91.7375 14.3914 120.1068 63.3682
CC009/UncJ f 28.7875 14.3914 57.1568 0.4182
CC009/UncJ m 59.05 14.3914 87.4193 30.6807
CC013/GeniUncJ f 79.875 14.3914 108.2443 51.5057
CC013/GeniUncJ m 105.35 20.3525 145.4702 65.2298
CC017/UncJ f 62.7833 16.6177 95.5414 30.0253
CC017/UncJ m 65.2 18.2038 101.0846 29.3154
CC018/UncJ f 126.8875 14.3914 155.2568 98.5182
CC018/UncJ m 164.45 14.3914 192.8193 136.0807
CC019/TauUncJ f 85.3875 14.3914 113.7568 57.0182
CC019/TauUncJ m 83.7 14.3914 112.0693 55.3307
CC024/GeniUncJ f 31.9429 15.385 62.2709 1.6148
CC024/GeniUncJ m 36.9375 14.3914 65.3068 8.5682
CC025/GeniUncJ f 36.95 16.6177 69.708 4.192
CC025/GeniUncJ m 47.03 12.872 72.4043 21.6557
CC026/GeniUncJ f 139.275 14.3914 167.6443 110.9057
CC026/GeniUncJ m 121.025 14.3914 149.3943 92.6557
CC032/GeniUncJ f 149.2375 14.3914 177.6068 120.8682
CC032/GeniUncJ m 116.275 14.3914 144.6443 87.9057
CC040/TauUncJ f 109.775 14.3914 138.1443 81.4057
CC040/TauUncJ m 115.5571 15.385 145.8852 85.2291
CC041/TauUncJ f 57.4375 14.3914 85.8068 29.0682
CC041/TauUncJ m 27.1 14.3914 55.4693 -1.2693
CC051/TauUncJ f 29.525 14.3914 57.8943 1.1557
CC051/TauUncJ m 23.94 12.872 49.3143 -1.4343
CC068/TauUncJ f 35.04 18.2038 70.9246 -0.8446
CC068/TauUncJ m 56.4 14.3914 84.7693 28.0307


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 82.1188 10.5334 102.8829 61.3546
CC003/UncJ both 113.495 13.6529 140.4085 86.5815
CC004/TauUncJ both 189.7425 11.6027 212.6146 166.8704
CC006/TauUncJ both 92.0062 12.4633 116.5748 67.4377
CC009/UncJ both 43.9187 10.1762 63.9789 23.8586
CC013/GeniUncJ both 92.6125 12.4633 117.181 68.044
CC017/UncJ both 63.9917 12.324 88.2857 39.6977
CC018/UncJ both 145.6688 10.1762 165.7289 125.6086
CC019/TauUncJ both 84.5437 10.1762 104.6039 64.4836
CC024/GeniUncJ both 34.4402 10.5334 55.2044 13.676
CC025/GeniUncJ both 41.99 10.51 62.708 21.272
CC026/GeniUncJ both 130.15 10.1762 150.2101 110.0899
CC032/GeniUncJ both 132.7563 10.1762 152.8164 112.6961
CC040/TauUncJ both 112.6661 10.5334 133.4303 91.9019
CC041/TauUncJ both 42.2687 10.1762 62.3289 22.2086
CC051/TauUncJ both 26.7325 9.654 45.7632 7.7018
CC068/TauUncJ both 45.72 11.6027 68.5921 22.8479




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA